Passing -1 stows the sample currently in the sample stage into a free
tray slot without mounting a replacement, matching the old control
system's sample_change(-1) behavior. Existing swap-path logic is
unchanged.
umvr_fsamy_tracked/umv_fsamy_tracked require feedback OFF but did not
enforce it. Add an _internal flag; for user/CLI calls, warn that feedback
must be off (active alignment may be lost), prompt (default yes), and
disable feedback on confirm. Internal callers pass _internal=True since
they already manage the feedback lifecycle (ftransfer_flomni_stage_out,
x_ray_eye_align height-centering and mvy jog).
- Add tomo_scan_resume() as the primary recommended way to continue an
interrupted scan, in both the user guide and the setup reference
(manual subtomo_start/start_angle/projection_number kept as fallback)
- Add a new "Queueing multiple scans" section (short walkthrough in the
user guide, full command reference + status semantics in the setup
reference, cross-linked via a new anchor)
- Document the live progress report's ETA, automatic gap detection, and
the total-time-lost-to-gaps summary
- Document the zero_deg_reference_at_each_subtomo tomo_parameters() option
- Fix stale SPEC_ptycho_align.m references -> BEC_ptycho_align.m
x12sa
