docs update

docs/user/ptychography/flomni.md

@@ -47,13 +47,16 @@ Manually move the gripper to a transfer position
 
 #### Coarse alignment
 
-After the sample transfer the sample stage moved to the measurement position with your new sample. The Xray eye will automatically move in and the shutter will open. You may already see the sample in the omny xeye interface running on the windows computer.
-If you see your sample already at the approximately correct height, you can skip steps 1 to 3. Otherwise adjust the height:
+After the sample transfer the sample stage moved to the measurement position with your new sample. The Xray eye will automatically move in, the alignment GUI opens and shows a current snapshot.
+If you see your sample already at the approximately correct height:
+
+1. `flomni.xrayeye_alignment_start()` start the coarse alignment of the sample by measuring (clicking in the X-ray eye software) the sample position at its height and then angles of 0, 45, 90, 135, 180 degrees. The GUI will present a fit of this data, which is automatically loaded to BEC for aligning the sample.
+
+Otherwise adjust the height manually:
 
 1. `flomni.feedback_disable()` disable the closed loop operation to allow movement of coarse stages
 1. `umvr_fsamy_tracked(0.01)`, attention: unit <mm>, move the sample stage relative up (positive) or down (negative) until the sample is approximately vertically centered in xray eye screen
 1. `flomni.xrayeye_update_frame()` will update the current image on the xray eye screen
-1. `flomni.xrayeye_alignment_start()` start the coarse alignment of the sample by measuring (clicking in the X-ray eye software) the sample position at its height and angles of 0, 45, 90, 135, 180 degrees. The GUI will present a fit of this data, which is automatically loaded to BEC for aligning the sample.
 
 #### Fine alignment