Aug in single photon inference
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@@ -20,18 +20,47 @@ configs['SiemenStar'] = {
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'noise': 0.13 # in keV
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'noise': 0.13 # in keV
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}
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}
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BinningFactor = 10
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BinningFactor = 10
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numberOfAugOps = 6
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Roi = configs['SiemenStar']['roi']
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Roi = configs['SiemenStar']['roi']
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X_st, X_ed, Y_st, Y_ed = Roi
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X_st, X_ed, Y_st, Y_ed = Roi
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mlSuperFrame = np.zeros(((Y_ed-Y_st)*BinningFactor, (X_ed-X_st)*BinningFactor))
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mlSuperFrame = np.zeros(((Y_ed-Y_st)*BinningFactor, (X_ed-X_st)*BinningFactor))
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countFrame = np.zeros((Y_ed-Y_st, X_ed-X_st))
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countFrame = np.zeros((Y_ed-Y_st, X_ed-X_st))
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subpixelDistribution = np.zeros((BinningFactor, BinningFactor))
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subpixelDistribution = np.zeros((BinningFactor, BinningFactor))
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def inv0(p): return p
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def inv1(p): return torch.stack([-p[..., 0], p[..., 1]], dim=-1)
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def inv2(p): return torch.stack([p[..., 0], -p[..., 1]], dim=-1)
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def inv3(p): return -p
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def inv4(p): return torch.stack([p[..., 1], p[..., 0]], dim=-1)
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def inv5(p): return torch.stack([p[..., 1], -p[..., 0]], dim=-1)
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def inv6(p): return torch.stack([-p[..., 1], p[..., 0]], dim=-1)
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def inv7(p): return torch.stack([-p[..., 1], -p[..., 0]], dim=-1)
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INVERSE_TRANSFORMS = {
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0: inv0,
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1: inv1,
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2: inv2,
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3: inv3,
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4: inv4,
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5: inv5,
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6: inv6,
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7: inv7,
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}
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def apply_inverse_transforms(predictions: torch.Tensor, numberOfAugOps: int) -> torch.Tensor:
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N = predictions.shape[0] // numberOfAugOps
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preds = predictions.view(N, numberOfAugOps, 2)
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corrected = torch.zeros_like(preds)
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for idx in range(numberOfAugOps):
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corrected[:, idx, :] = INVERSE_TRANSFORMS[idx](preds[:, idx, :])
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return corrected.mean(dim=1)
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if __name__ == "__main__":
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if __name__ == "__main__":
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task = 'SiemenStar'
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task = 'SiemenStar'
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config = configs[task]
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config = configs[task]
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model = models.get_model_class(config['modelVersion'])().cuda()
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model = models.get_model_class(config['modelVersion'])().cuda()
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model.load_state_dict(torch.load(f'/home/xie_x1/MLXID/DeepLearning/Models/singlePhoton{config["modelVersion"]}_15.3keV_Noise{config["noise"]}keV_E500.pth', weights_only=True))
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model.load_state_dict(torch.load(f'/home/xie_x1/MLXID/DeepLearning/Models/singlePhoton{config["modelVersion"]}_15.3keV_Noise{config["noise"]}keV_E500_aug8.pth', weights_only=True))
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predictions = []
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predictions = []
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referencePoints = []
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referencePoints = []
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nChunks = len(config['dataFiles']) // 32 + 1
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nChunks = len(config['dataFiles']) // 32 + 1
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@@ -40,12 +69,17 @@ if __name__ == "__main__":
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edFileIdx = min((idxChunk + 1) * 32, len(config['dataFiles']))
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edFileIdx = min((idxChunk + 1) * 32, len(config['dataFiles']))
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sampleFiles = config['dataFiles'][stFileIdx : edFileIdx]
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sampleFiles = config['dataFiles'][stFileIdx : edFileIdx]
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print(f'Processing files {stFileIdx} to {edFileIdx}...')
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print(f'Processing files {stFileIdx} to {edFileIdx}...')
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dataset = singlePhotonDataset(sampleFiles, sampleRatio=1.0, datasetName='Inference')
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dataset = singlePhotonDataset(
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sampleFiles,
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sampleRatio=1.0,
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datasetName='Inference',
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numberOfAugOps=numberOfAugOps
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)
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dataLoader = torch.utils.data.DataLoader(
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dataLoader = torch.utils.data.DataLoader(
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dataset,
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dataset,
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batch_size=8192,
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batch_size=8192,
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shuffle=False,
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shuffle=False,
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num_workers=16,
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num_workers=32,
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pin_memory=True,
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pin_memory=True,
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)
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)
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@@ -59,6 +93,7 @@ if __name__ == "__main__":
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predictions.append(outputs.cpu())
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predictions.append(outputs.cpu())
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predictions = torch.cat(predictions, dim=0)
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predictions = torch.cat(predictions, dim=0)
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predictions = apply_inverse_transforms(predictions, numberOfAugOps)
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predictions += torch.tensor([1.5, 1.5]).unsqueeze(0) # adjust back to original coordinate system
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predictions += torch.tensor([1.5, 1.5]).unsqueeze(0) # adjust back to original coordinate system
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referencePoints = np.concatenate(referencePoints, axis=0)
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referencePoints = np.concatenate(referencePoints, axis=0)
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print(f'mean x = {torch.mean(predictions[:, 0])}, std x = {torch.std(predictions[:, 0])}')
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print(f'mean x = {torch.mean(predictions[:, 0])}, std x = {torch.std(predictions[:, 0])}')
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