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Update ptychoScopy

skoupy_r
2023-12-12 15:37:57 +01:00
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ptychoScopy.md

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Jupyter based interactive data acquisition tool designed for appropriate ptychographic data collection. It computes nessesary characteristics which play crutial role in final data reconstruction. You can chose of **Direct methods** (mainly Single Side Band ptychography) or **Iterative reconstruction** which takes probe defocus into account. With this tool, you can check for probe CTF, scanning step size, probe overlap, detector camera length a proper angular range collection, reconstructed probe size and many more.
- [Step by step instructions](Instructions)
- [Microscope control panel](Controls)
- [About](About)
### Calibrations
Each STEM has its own combination of parameters (magnifications, probe currents, aperture angles, camera lengths or detectors). These have to be taken into account for proper data acquisition design. Before first use, fill your own values into the file **calibrations.xlsx**. Instructions how to fill are in the sheet called HELP.
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To open interactive panel, run the line:
`display(widgets.HBox([controls, gui]))`
![ptychoscopy_main](uploads/c0518a94e945455a4ca988f19b19090a/ptychoscopy_main.PNG)
![ptychoscopy_main](uploads/c0518a94e945455a4ca988f19b19090a/ptychoscopy_main.PNG)
- [Step by step instructions](Instructions)
- [Microscope control panel](Controls)
- [About](About)