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Merge branch 'main' of https://gitlab.psi.ch/apog/acsmnode.git

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florez_j
2025-01-31 09:33:04 +01:00
parent fa9a20c35c 7e86a4225e
commit 1762e9a1b2
1 changed files with 44 additions and 33 deletions
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77
pipelines/params/calibration_factors.yaml
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@ -1,11 +1,16 @@
# Define common factors # Define common factors
# Get values from data/<station>/<year>/config_acsm_<year>.r, values used in Tofware analysis. # Get values from data/<station>/<year>/config_acsm_<year>.r, values used in Tofware analysis.
IE: &IE 145.9 IE_tofware: &IE 145.9
ABRefWave: &ABRefWave 254000 ABRefWave_tofware: &ABRefWave 254000
RIE_SO4: &RIE_SO4 0.63 RIE_SO4_tofware: &RIE_SO4 0.63
RIE_NH4: &RIE_NH4 3.495 RIE_NH4_tofware: &RIE_NH4 3.495
RIE_Org: &RIE_Org 1.4 RIE_Org_tofware: &RIE_Org 1.4
RIE_NO3_tofware: &RIE_NO3 1.05
RIE_Chl_tofware: &RIE_Chl 1.0
CE_tofware: &CE 1.0
flow_ref_tofware: &flow_ref 1.36
# Get values from data/<station>/<year>/cal.csv # Get values from data/<station>/<year>/cal.csv
IE_correct: &IE_correct 145.9 IE_correct: &IE_correct 145.9
@ -13,86 +18,92 @@ AB_ref_correct: &AB_ref_correct 254000
RIE_SO4_correct: &RIE_SO4_correct 0.63 RIE_SO4_correct: &RIE_SO4_correct 0.63
RIE_NH4_correct: &RIE_NH4_correct 3.495 RIE_NH4_correct: &RIE_NH4_correct 3.495
RIE_Org_correct: &RIE_Org_correct 1.4 RIE_Org_correct: &RIE_Org_correct 1.4
RIE_NO3_correct: &RIE_NO3_correct 1.05
RIE_Chl_correct: &RIE_Chl_correct 1.0
CE_correct: &CE_correct 1.0
flow_ref_correct: &flow_ref_correct 1.36 flow_ref_correct: &flow_ref_correct 1.36
# Define mappings for associated variables # Define mappings for associated variables
variables: variables:
# all_dat[, NO3_correct := (NO3_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] # all_dat[, NO3_correct := (NO3_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)]
NO3_11000: NO3_11000:
num: [*IE, *AB_ref_correct] num: [*IE, *RIE_NO3, *AB_ref_correct, *CE]
den: [*IE_correct, *ABRefWave] den: [*IE_correct, *RIE_NO3_correct, *ABRefWave, *CE_correct]
# all_dat[, SO4_correct := (SO4_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] # all_dat[, SO4_correct := (SO4_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)]
SO4_11000: SO4_11000:
num: [*IE, *RIE_SO4, *AB_ref_correct] num: [*IE, *RIE_SO4, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_SO4_correct, *ABRefWave] den: [*IE_correct, *RIE_SO4_correct, *ABRefWave, *CE_correct]
# all_dat[, NH4_correct := (NH4_11000 * IE * RIE_NH4 * AB_ref_correct) / (IE_correct * RIE_NH4_correct * ABRefWave)] # all_dat[, NH4_correct := (NH4_11000 * IE * RIE_NH4 * AB_ref_correct) / (IE_correct * RIE_NH4_correct * ABRefWave)]
NH4_11000: NH4_11000:
num: [*IE, *RIE_NH4, *AB_ref_correct] num: [*IE, *RIE_NH4, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_NH4_correct, *ABRefWave] den: [*IE_correct, *RIE_NH4_correct, *ABRefWave, *CE_correct]
# all_dat[, Org_correct := (Org_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] # all_dat[, Org_correct := (Org_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)]
Org_11000: Org_11000:
num: [*IE, *AB_ref_correct] num: [*IE, *RIE_Org, *AB_ref_correct, *CE]
den: [*IE_correct, *ABRefWave] den: [*IE_correct, *RIE_Org_correct, *ABRefWave, *CE_correct]
# all_dat[, Chl_correct := (Chl_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] # all_dat[, Chl_correct := (Chl_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)]
Chl_11000: Chl_11000:
num: [*IE, *AB_ref_correct] num: [*IE, *RIE_Chl, *AB_ref_correct, *CE]
den: [*IE_correct, *ABRefWave] den: [*IE_correct, *RIE_Chl_correct, *ABRefWave, *CE_correct]
# m/z levels columns are treated differently to those above
# all_dat[, Org_44_11000_correct := (Org_44_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] # all_dat[, Org_44_11000_correct := (Org_44_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)]
Org_44_11000: Org_44_11000:
num: [*IE, *AB_ref_correct] num: [*IE, *RIE_Org, *AB_ref_correct, *CE]
den: [*IE_correct, *ABRefWave] den: [*IE_correct, *RIE_Org_correct, *ABRefWave, *CE, *RIE_Org, *CE_correct]
# all_dat[, Org_43_11000_correct := (Org_43_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] # all_dat[, Org_43_11000_correct := (Org_43_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)]
Org_43_11000: Org_43_11000:
num: [*IE, *AB_ref_correct] num: [*IE, *RIE_Org, *AB_ref_correct, *CE]
den: [*IE_correct, *ABRefWave] den: [*IE_correct, *RIE_Org_correct, *ABRefWave, *CE, *RIE_Org, *CE_correct]
# all_dat[, Org_60_11000_correct := (Org_60_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] # all_dat[, Org_60_11000_correct := (Org_60_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)]
Org_60_11000: Org_60_11000:
num: [*IE, *AB_ref_correct] num: [*IE, *RIE_Org, *AB_ref_correct, *CE]
den: [*IE_correct, *ABRefWave] den: [*IE_correct, *RIE_Org_correct, *ABRefWave, *CE, *RIE_Org, *CE_correct]
# all_dat[, NO3_30_11000_correct := (NO3_30_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)] # all_dat[, NO3_30_11000_correct := (NO3_30_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)]
NO3_30_11000: NO3_30_11000:
num: [*IE, *AB_ref_correct] num: [*IE, *RIE_NO3, *AB_ref_correct, *CE]
den: [*IE_correct, *ABRefWave] den: [*IE_correct, *RIE_NO3_correct, *ABRefWave, *CE, *RIE_NO3, *CE_correct]
# all_dat[, SO4_98_11000_correct := (SO4_98_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] # all_dat[, SO4_98_11000_correct := (SO4_98_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)]
SO4_98_11000: SO4_98_11000:
num: [*IE, *RIE_SO4, *AB_ref_correct] num: [*IE, *RIE_SO4, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_SO4_correct, *ABRefWave] den: [*IE_correct, *RIE_SO4_correct, *ABRefWave, *CE, *RIE_SO4, *CE_correct]
# all_dat[, SO4_81_11000_correct := (SO4_81_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] # all_dat[, SO4_81_11000_correct := (SO4_81_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)]
SO4_81_11000: SO4_81_11000:
num: [*IE, *RIE_SO4, *AB_ref_correct] num: [*IE, *RIE_SO4, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_SO4_correct, *ABRefWave] den: [*IE_correct, *RIE_SO4_correct, *ABRefWave, *CE, *RIE_SO4, *CE_correct]
# all_dat[, SO4_82_11000_correct := (SO4_82_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] # all_dat[, SO4_82_11000_correct := (SO4_82_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)]
SO4_82_11000: SO4_82_11000:
num: [*IE, *RIE_SO4, *AB_ref_correct] num: [*IE, *RIE_SO4, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_SO4_correct, *ABRefWave] den: [*IE_correct, *RIE_SO4_correct, *ABRefWave, *CE, *RIE_SO4, *CE_correct]
# all_dat[, SO4_62_11000_correct := (SO4_62_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] # all_dat[, SO4_62_11000_correct := (SO4_62_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)]
SO4_62_11000: SO4_62_11000:
num: [*IE, *RIE_SO4, *AB_ref_correct] num: [*IE, *RIE_SO4, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_SO4_correct, *ABRefWave] den: [*IE_correct, *RIE_SO4_correct, *ABRefWave, *CE, *RIE_SO4, *CE_correct]
# all_dat[, SO4_48_11000_correct := (SO4_48_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)] # all_dat[, SO4_48_11000_correct := (SO4_48_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)]
SO4_48_11000: SO4_48_11000:
num: [*IE, *RIE_SO4, *AB_ref_correct] num: [*IE, *RIE_SO4, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_SO4_correct, *ABRefWave] den: [*IE_correct, *RIE_SO4_correct, *ABRefWave, *CE, *RIE_SO4, *CE_correct]