feat: add sbatch file to run via Slurm
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22
scripts/run_sp2xr_pipeline.sbatch
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22
scripts/run_sp2xr_pipeline.sbatch
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@@ -0,0 +1,22 @@
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#!/bin/bash -l
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#SBATCH --partition=general
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#SBATCH --time=5-00:00:00
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#SBATCH --output=/data/user/bertoz_b/merlin6data/SP2XR_code/logs/run%j.log
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#SBATCH --error=/data/user/bertoz_b/merlin6data/SP2XR_code/logs/Error_run%j.log
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#SBATCH --clusters=merlin7
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#SBATCH --nodes=1
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#SBATCH --ntasks=1
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#SBATCH --ntasks-per-node=1
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#SBATCH --cpus-per-task=1
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#SBATCH --job-name=sp2xr_nya
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mkdir -p /scratch/$SLURM_JOB_ID
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export TMPDIR=/scratch/$SLURM_JOB_ID
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module use unstable
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source /data/user/bertoz_b/merlin6data/SP2XR_code/.venv/bin/activate
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python -u scripts/sp2xr_pipeline.py --config /data/user/bertoz_b/merlin6data/SP2XR_code/tests/run_config.yaml
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rm -rf /scratch/$SLURM_JOB_ID
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