From 7bd42c22a2862d117817602b0d7c3e401b5a54ff Mon Sep 17 00:00:00 2001
From: Barbara Bertozzi <barbara.bertozzi@psi.ch>
Date: Fri, 22 Aug 2025 18:13:50 +0200
Subject: [PATCH] feat: add sbatch file to run via Slurm

---
 scripts/run_sp2xr_pipeline.sbatch | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)
 create mode 100644 scripts/run_sp2xr_pipeline.sbatch

diff --git a/scripts/run_sp2xr_pipeline.sbatch b/scripts/run_sp2xr_pipeline.sbatch
new file mode 100644
index 0000000..b2eea13
--- /dev/null
+++ b/scripts/run_sp2xr_pipeline.sbatch
@@ -0,0 +1,22 @@
+#!/bin/bash -l
+
+#SBATCH --partition=general
+#SBATCH --time=5-00:00:00
+#SBATCH --output=/data/user/bertoz_b/merlin6data/SP2XR_code/logs/run%j.log
+#SBATCH --error=/data/user/bertoz_b/merlin6data/SP2XR_code/logs/Error_run%j.log
+#SBATCH --clusters=merlin7
+#SBATCH --nodes=1
+#SBATCH --ntasks=1
+#SBATCH --ntasks-per-node=1
+#SBATCH --cpus-per-task=1
+#SBATCH --job-name=sp2xr_nya
+
+mkdir -p /scratch/$SLURM_JOB_ID
+export TMPDIR=/scratch/$SLURM_JOB_ID
+
+module use unstable
+source /data/user/bertoz_b/merlin6data/SP2XR_code/.venv/bin/activate
+
+python -u scripts/sp2xr_pipeline.py --config /data/user/bertoz_b/merlin6data/SP2XR_code/tests/run_config.yaml
+
+rm -rf /scratch/$SLURM_JOB_ID