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d62327ba25
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Created g5505_utils.py module with very specific helper functions of the 5505 group. This is to remove clutter from the main module hdf5_lib.py
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2024-02-13 16:39:05 +01:00 |
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8f757ca68c
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Implemented filtering mechanishm in function create_hdf5_file_from_filesystem_path, which allows only directory paths containing a key word in include list to be stored in the hdf5 file group structure.
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2024-02-02 16:30:29 +01:00 |
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be43367bc0
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Updated function create_hdf5_file_from_filesystem_path(ofilename,input_file_system_path), which now can integrate xps ibw files as datasets in the resulting file.
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2024-02-01 15:29:03 +01:00 |
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118191d93a
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Implemented minor change to output dictionary. keys meant to be dataset's attributes are now access to the key attributes_key, that take the value of a dictionary.
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2024-02-01 15:26:05 +01:00 |
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9a88fbf3ae
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Implementated module to read file of common types arising in multiphase chemistry group experiments. Status: in progres.
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2024-01-31 16:47:28 +01:00 |
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755d0cbf2e
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Implemented partially the func create_hdf5_file_from_filesystem_path, which reads a file system path and copies if directory structure in a hdf5 file. Next steps require aligning the structure in the context of our FAIR data file hierarchy and adding data to it. Last commit of the year :). Happy holidays!
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2023-12-22 15:05:28 +01:00 |
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ce0e7e08b1
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Refined the construct_mask code so that it works with datetime defined intervals.
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2023-11-09 16:26:54 +01:00 |
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bf4fc055a5
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Implemented module for background estimation
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2023-11-09 10:17:47 +01:00 |
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99a0305472
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Removed FileList.h5
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2023-11-03 09:58:01 +01:00 |
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ccefbc2501
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Pushed new FileList_v2.h5
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2023-11-03 09:57:01 +01:00 |
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8730a4d2c8
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Improved comments
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2023-11-02 16:11:21 +01:00 |
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be1bfc8015
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Improved comments
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2023-11-02 16:07:24 +01:00 |
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5a156d17a6
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Refactored according to minor changes performed to the hdf5_lib.py dependency.
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2023-11-02 15:53:33 +01:00 |
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bf4d03f369
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Added output_files' folder, environment.yml file, and jupyter notebook demo on how to create and visualize hdf5 files.
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2023-11-02 15:49:35 +01:00 |
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25c0f07cc3
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Implemented 1) function to add metadata to root folder in existing hdf5 file, 2) piece of code to display root folder's metadata on treemap's hoover.
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2023-11-02 15:46:14 +01:00 |
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86be738216
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Rerun jupyter notebook and updated FileList.h5 and napp_plotlib.py due to changes on code dependencies.
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2023-10-31 14:33:25 +01:00 |
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cc52fafc44
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Implemented a few new features such as create_group_hierarchy of any depth, get_parent_child_relationships, and display_group_hierarchy_on_a_treemap. Additionally, unified read_hdf5_as_dataframe's and documented it better.
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2023-10-31 14:30:34 +01:00 |
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87b256d93e
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Updated create_hdf5_file.py with input, enabling either botton-up and top-down construction of group hierarchies. So, far, implementation works for top-down construction where group hierarchies can be of any depth and defined by categorical columns.
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2023-10-26 14:44:53 +02:00 |
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d95a08caaa
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Implemented partially validation of group hierarchy input param. It needs to be extended to deeper group hierarchies and perhaps output nonconforming lowerlevel groups.
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2023-10-20 16:56:27 +02:00 |
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7eb1686d1f
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Modified creat_hdf5_file to admit group_by_list of functions that will be used to create group hierarchy.
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2023-10-19 16:57:33 +02:00 |
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7ff1d8d09b
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Implemented package to interface openbis with python and upload hdf5 file data from Thorsten data into openbis.
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2023-10-18 17:00:01 +02:00 |
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54ac1d5463
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Modified to find input data inside newly added input_files folder.
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2023-10-10 09:02:45 +02:00 |
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0248ca3c6e
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Added a new function read_hdf5_as_dataframe_v2 which supports hdf5 files without datasets and replaced the dataframe construction procedure to a column wise basis.
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2023-10-10 09:00:41 +02:00 |
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d42ddd6ff0
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Removed Filelist.h5, which is now relocated in input_files folder
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2023-10-10 08:52:32 +02:00 |
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736f0ba915
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Added folders input_files and logs to store input data (hdf5 files) and resulting logs.
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2023-10-10 08:51:10 +02:00 |
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9bce95663c
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Reran jupyter notebook.
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2023-08-22 15:11:25 +02:00 |
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ebf41763df
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Reran jupyter notebook.
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2023-08-22 15:09:59 +02:00 |
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e3225fff4b
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Reduced a few lines of code and documented plot_spectra function.
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2023-08-22 15:09:18 +02:00 |
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3e9a26f147
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Initial commit. hdf5_lib.py contains functions to read hdf5 file as dataframe. and napp_plotlib contains functions to plot image and spectra. jupyter notebook included to illustrate functions.
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2023-08-22 14:28:27 +02:00 |
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8c4851ffea
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Initial commit
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2023-08-22 14:22:31 +02:00 |
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