 florez_j
|
600899dca2
|
Update .gitignore with output_files/
|
2024-12-04 16:53:57 +01:00 |
|
|
florez_j
|
4a91785efb
|
Add .gitkeep and keep this folder empty. it is only to be used for local processing
|
2024-12-04 16:52:50 +01:00 |
|
|
florez_j
|
49dff5b87b
|
Update readme with getting started section
|
2024-12-04 16:24:14 +01:00 |
|
|
florez_j
|
3e37854445
|
Solved binary incompatibility issue of generated environment by conda installing h5py and numpy from conda-forge or default channels.
|
2024-12-04 16:15:42 +01:00 |
|
|
florez_j
|
112b88e31f
|
Updated bash script and yml env file to set up python interpreter.
|
2024-12-04 13:52:35 +01:00 |
|
|
florez_j
|
d422067223
|
Update to readme.md
|
2024-12-03 13:55:45 +01:00 |
|
|
florez_j
|
47c9bd8e3d
|
Update readme with key features of the repo.
|
2024-12-03 13:50:53 +01:00 |
|
|
florez_j
|
31d8af6aef
|
Updated README.md with software arquitecture figure
|
2024-12-02 17:28:22 +01:00 |
|
|
florez_j
|
b2455b2456
|
Updated README.md with software arquitecture figure
|
2024-12-02 17:24:48 +01:00 |
|
|
florez_j
|
6bc89ebff0
|
Updated README
|
2024-12-02 17:22:52 +01:00 |
|
|
florez_j
|
1a941bbb6e
|
Updated figure name.
|
2024-12-02 17:08:36 +01:00 |
|
|
florez_j
|
c57bb62ebd
|
Updated ci runner pipeline fot gitlab page
|
2024-12-02 16:31:49 +01:00 |
|
|
florez_j
|
f3bb82a937
|
Updated documentation and built doc website
|
2024-12-02 16:31:03 +01:00 |
|
|
florez_j
|
23e0ced190
|
Relocated to visualization module
|
2024-12-02 15:39:41 +01:00 |
|
|
florez_j
|
fc561a6068
|
Add __init__.py
|
2024-12-02 15:36:03 +01:00 |
|
|
florez_j
|
c373c18062
|
Moved hdf5_lib.py to visualization folder
|
2024-12-02 15:34:44 +01:00 |
|
|
florez_j
|
f2df2ced66
|
Removed no longer useful notebook
|
2024-12-02 15:32:57 +01:00 |
|
|
florez_j
|
4797c8e894
|
Added env file specification and bash script for env setup
|
2024-12-02 15:10:21 +01:00 |
|
|
florez_j
|
2e52109bee
|
removed review folder. This is now supposed to be create for review of experimental campaign data objects metadata.
|
2024-12-02 14:32:34 +01:00 |
|
|
florez_j
|
dccf64ef30
|
Configure GitLab Pages
|
2024-11-26 13:43:09 +01:00 |
|
|
florez_j
|
f4f27b7084
|
Add draft of dima documentation
|
2024-11-26 13:40:43 +01:00 |
|
|
florez_j
|
11ca454b94
|
Removed bacause some of the functionalities have been outsourced to other modules src/hdf5_ops.py and src/hdf5_writer.py
|
2024-11-26 11:55:06 +01:00 |
|
|
florez_j
|
22298f643a
|
Merge branch 'main' of https://gitlab.psi.ch/5505/dima
|
2024-11-25 15:50:25 +01:00 |
|
|
florez_j
|
31a129694c
|
Updated instrument dictionaries with variable descriptor names aligned with CF metadata conventions.
|
2024-11-25 15:49:49 +01:00 |
|
|
florez_j
|
5c61e2391a
|
Update to DIMA package path resolution from file.
|
2024-11-24 19:45:18 +01:00 |
|
|
florez_j
|
1b2b319295
|
Attempt to dynamically resolve path to dima package, when excecuted from command line.
|
2024-11-24 17:37:38 +01:00 |
|
|
florez_j
|
1174ffc8b8
|
Commented out metadata info about group members for a given group. This is to simplify yaml or json representation of the metadata.
|
2024-11-24 15:57:54 +01:00 |
|
|
florez_j
|
d7f6e52068
|
Reimplemented code snippet using hdf5_Writer module
|
2024-11-24 11:32:26 +01:00 |
|
|
florez_j
|
967be876d1
|
Moved func create_hdf5_file_from_dataframe() from hdf5_lib_part2 into hdf5_write.py
|
2024-11-24 11:30:08 +01:00 |
|
|
florez_j
|
0330773f08
|
Moved read_mtable_as_dataframe(filename) to src/hdf5_ops.py
|
2024-11-24 11:03:44 +01:00 |
|
|
florez_j
|
3122c4482f
|
Removed logs/ folder. This is usually created locally to trace certain file copying, transfer and conversion processes.
|
2024-11-24 10:51:05 +01:00 |
|
|
florez_j
|
c257ab6072
|
Rerun jupyternotebooks to check their functionality after relocating them to notebooks. OpenBis related python scripts still need to be tested.
|
2024-11-24 10:45:40 +01:00 |
|
|
florez_j
|
02ded9c11a
|
Add hidden.py to the list. This file may contain sensitive information is only to be accessed locally or from a secure location.
|
2024-11-24 10:41:32 +01:00 |
|
|
florez_j
|
b24d33ab15
|
Check whether h5 file being written exists. If so, we do not overwrite it because it may be underdoing refinement, changes or updates, for archiving, sharing, or publishing.
|
2024-11-24 10:38:13 +01:00 |
|
|
florez_j
|
ca314f971d
|
Add utility functions add_project_path_to_sys_path() to set up path to DIMA's modules dynamically.
|
2024-11-24 10:08:19 +01:00 |
|
|
florez_j
|
a928c4ef4c
|
Moved demos .py to notebooks. Note: Maybe turn them to jupyternotebooks for consistency
|
2024-11-24 07:49:50 +01:00 |
|
|
florez_j
|
6701bc06ad
|
Added read_mtable_as_dataframe(filename) back so that jupyter notebook can use it to demonstrate some functionality
|
2024-11-23 16:31:29 +01:00 |
|
|
florez_j
|
fd92bce802
|
Implemented sanitize dataframe function to deal with 'O' which may have numbers or strings detected as string types. Then we use it prior to convert dataframe into structured numpy array.
|
2024-11-23 16:28:49 +01:00 |
|
|
florez_j
|
8ab2cb3bdb
|
Moved to notebooks/
|
2024-11-23 12:29:55 +01:00 |
|
|
florez_j
|
33ad4b8509
|
Moved to notebooks/
|
2024-11-23 12:16:13 +01:00 |
|
|
florez_j
|
c30bdab41a
|
Moved to notebooks/ to improve repo organization
|
2024-11-23 12:06:27 +01:00 |
|
|
florez_j
|
3535fd0cc2
|
Moved data integration ipynb to notebooks folder to improve readability
|
2024-11-23 11:24:28 +01:00 |
|
|
florez_j
|
e486b4659c
|
Added .pkl extension in the list of admissible file extensions
|
2024-11-21 11:47:41 +01:00 |
|
|
florez_j
|
d13e10e44f
|
Modified logger setup to create monthly logs
|
2024-11-21 11:46:11 +01:00 |
|
|
florez_j
|
4632554af1
|
Added a logs/ and envs/ folder to gitignore.
|
2024-11-21 11:44:38 +01:00 |
|
|
florez_j
|
1be4b8493a
|
Improved progress description stdout
|
2024-11-10 18:21:00 +01:00 |
|
|
florez_j
|
ca2c98eebc
|
Fixed command line interface bug
|
2024-11-10 18:19:59 +01:00 |
|
|
florez_j
|
8d17bf267c
|
Major code refactoring and simplifications to enhance modularity. Included a command line interface.
|
2024-11-01 09:52:41 +01:00 |
|
|
florez_j
|
510683a50d
|
Renamed the input argument yaml_review_file as review_yaml_file.
|
2024-11-01 09:51:12 +01:00 |
|
|
florez_j
|
e2fec03d4a
|
Included cli commands update and serialize to simplify running metadata revision pipeline.
|
2024-10-29 07:56:43 +01:00 |
|