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Adding some files to git, working on methods, making some edits...

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daviditschan committed 2026-09-17 18:29:50 +02:00
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chapters/acknowledgements.ist → chapters/01_introduction.ist
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We use a sequential workflow outlined in figure \ref{methods: fig: overview over workflow}. It consists of the following steps:
\begin{enumerate}
\item{\textbf{Produce \gls{SOAa} filter in \gls{OFRa}}: We use the \gls{OFRa} to produce \gls{SOAa} by inputting \gls{VOCa} and \gls{O3f} into the \gls{OFRa}, where they react to form a polydisperse \gls{SOAa}. This \gls{SOAa} is captured on a filter. In a parallel exit line, the size distribution of the \gls{SOAa} is measured using a \gls{SMPSa} and the \gls{O3f} concentration of the exit gas is measured using an \gls{O3f} monitor.}
\end{enumerate}
\begin{figure}[h]
\centering
\includegraphics{05_Method_Overview.pdf}
@@ -30,14 +26,39 @@
\label{methods: fig: overview over workflow}
\end{figure}
\section{Oxidation Flow Reactor}
\begin{enumerate}
\item{
\textbf{\Gls{SOAa} filter production in \gls{OFRa}}: Within the \gls{OFRa}, we produce \gls{SOAa} through the reaction of a \gls{VOCa} with \gls{O3f}. The resulting \gls{SOAa} is collected on a filter. The detailed procedure is outlined in section \ref{methods: section: SOA filter production in OFR}.}
\item{
\textbf{Filter extraction and \gls{TOCa} analysis}. The filters produced in the previous step are extracted into aqueous solution and \gls{TOCa} is measured as a proxy for sample content of organics. This is outlined in detail in section \ref{methods: section: filter extraction and TOC analysis}.}
\item{
\textbf{CWFTR experiments}. In this step, the solutions from the extracted filters are mixed with iron and \gls{I-f}. Using such solutions, flow tubes are coated and the products of the reaction of their film with \gls{O3f} are measured in a \gls{BTOF-CIMSa}. The exact methodology is described in section \ref{methods: section: CWFTR Experiments}}
\item{
\textbf{Data Analysis}. In this step, the data from the \gls{BTOF-CIMSa} are analysed using \emph{IGOR Pro} and \emph{Python}. Details are available in section \ref{methods: section: data analysis}.}
\end{enumerate}
\section{\gls{SOAa} filter production in \gls{OFRa}}\label{methods: section: SOA filter production in OFR}
An overview over the setup for filter production is displayed in figure \ref{methods: fig: overview over OFR setup}. Briefly, \gls{O2f} and \gls{N2f} from the in-house gas connection at \gls{PSIa} are first mixed at controlled ratios and guided inton the flow tube of the \gls{OFRa}. Usually, $\gls{VFLOWs}_{\ce{N2}}=\qty{3.95}{\liter\per\minute}$
\begin{figure}[h]
\centering
\includegraphics{03_OFR_Flowchart.pdf}
\caption[Overview over OFR Flowchart]{\textbf{Overview over OFR Flowchart}. Flow Chart displaying the functionality of the OFR Setup, including various flows, instruments, diverse valves and other things.}
\label{methods: fig: overview over OFR setup}
\end{figure}
\subsection{Procedure}
\subsection{Oxidation Flow Reactor}
\subsection{Scanning Mobility Particle Sizer}
\subsection{Ozone analyser and other instrumentation}
The aerosol concentration is measured using a
\begin{equation}
m_{\textnormal{F}}=\int_{t_{\textnormal{in}}}^{t_{\textnormal{out}}}\gls{MFLOWs}\,\der{t}\approx\sum_{\textnormal{Samples}}\gls{MFLOWs}_{i}\Delta t_{i}
\end{equation}
\begin{longtblr}[
caption = {Overview over filters and flows},
entry={Overview over filters and flows},
@@ -78,7 +99,12 @@
\bottomrule
\end{longtblr}
\section{Filter TOC Measurement}
\section{Filter extraction and \gls{TOCa}-analysis}\label{methods: section: filter extraction and TOC analysis}
\subsection{Preparation}
\subsection{Extraction}
\subsection{Calibration}
\subsection{Measurements}
\begin{figure}
\centering
@@ -87,11 +113,14 @@
\label{methods: fig: solution preparation}
\end{figure}
\section{Preparation of coating solution}
\section{CWFTR experiments}
\label{methods: section: CWFTR Experiments}
\subsection{Preparation}
\subsection{Coating solution Preparation}
\subsection{Procedure}
\section{Coated Wall Flow Tube experiment}
\section{Data Analysis}
\section{Data analysis}
\label{methods: section: data analysis}
\end{document}
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% !TeX program = lualatex
%% ------------------------------------------------------------------%
%% SUBFILE MODE
\documentclass[../main/main.tex]{subfiles}
\graphicspath{{../graphics/}{../graphics/charts/}{../graphics/postscript_figures/}{../graphics/raster_images/}}
%% ------------------------------------------------------------------%
%% DOCUMENT
\begin{document}
\pagestyle{mainbody}
\chapter{Results}
\thispagestyle{mainbody}
\section{OFR- and TOC Data}
\begin{figure}[h]
\centering
\hspace*{\fill}
\begin{subfigure}[t]{0.499\textwidth}
\centering
\includegraphics[scale=1]{../../analysis/OFR_Analysis/20260903_SET02_EXP14/figure.pdf}
\subcaption{Data for filter in set 2 experiment 14 (03.09.2026).}
\label{subfig: aPinene filter SMPS/O3 data: filter 1}
\end{subfigure}
\hfill
\begin{subfigure}[t]{0.49\textwidth}
\centering
\includegraphics[scale=1]{../../analysis/OFR_Analysis/20260904_SET02_EXP15/figure.pdf}
\subcaption{Data for filter in set 2 experiment 15 (04.09.2026).}
\label{subfig: aPinene filter SMPS/O3 data: filter 2}
\end{subfigure}
\hspace*{\fill}
\vfill
\hspace*{\fill}
\begin{subfigure}[t]{0.49\textwidth}
\centering
\includegraphics[scale=1]{../../analysis/OFR_Analysis/20260910_SET02_EXP16/figure.pdf}
\subcaption{Data for filter in set 2 experiment 16 (10.09.2026).}
\label{subfig: aPinene filter SMPS/O3 data: filter 3}
\end{subfigure}
\hfill
\begin{subfigure}[t]{0.49\textwidth}
\centering
\includegraphics[scale=1]{../../analysis/OFR_Analysis/20260914_SET02_EXP17/figure.pdf}
\subcaption{Data for filter in set 2 experiment 17 (14.09.2026).}
\label{subfig: aPinene filter SMPS/O3 data: filter 4}
\end{subfigure}
\hspace*{\fill}
\caption[Data for \glsname{A-PINENEf} filters]{\textbf{Data for \glsname{A-PINENEf} filters}. \textbf{\subref{subfig: aPinene filter SMPS/O3 data: filter 1}}: Data for the filter from set 2 experiment 14 from 03.09.2026. Dotted lines indicate activating and deactivating the \glsname{O3f} source, respectively. Dash-dotted lines indicate the activation and deactivation of \glsname{A-PINENEf} flow. \textbf{\subref{subfig: aPinene filter SMPS/O3 data: filter 2} --- \subref{subfig: aPinene filter SMPS/O3 data: filter 4}}: As in \subref{subfig: aPinene filter SMPS/O3 data: filter 1}, but for set 2 experiments 15, 16 and 17, respectively.}
\label{fig: aPinene filter SMPS/O3 data}
\end{figure}
\begin{figure}[h]
\centering
\hspace*{\fill}
\begin{subfigure}[t]{0.499\textwidth}
\centering
\includegraphics[scale=1]{../../analysis/OFR_Analysis/20260914_SET02_EXP18/figure.pdf}
\subcaption{Data for filter in set 2 experiment 18 (14.09.2026).}
\label{subfig: Limonene filter SMPS/O3 data: filter 1}
\end{subfigure}
\hfill
\begin{subfigure}[t]{0.49\textwidth}
\centering
\includegraphics[scale=1]{../../analysis/OFR_Analysis/20260915_SET02_EXP19/figure.pdf}
\subcaption{Data for filter in set 2 experiment 19 (15.09.2026).}
\label{subfig: Limonene filter SMPS/O3 data: filter 2}
\end{subfigure}
\hspace*{\fill}
\vfill
\hspace*{\fill}
\begin{subfigure}[t]{0.49\textwidth}
\centering
\includegraphics[scale=1]{../../analysis/OFR_Analysis/20260915_SET02_EXP20/figure.pdf}
\subcaption{Data for filter in set 2 experiment 20 (15.09.2026).}
\label{subfig: Limonene filter SMPS/O3 data: filter 3}
\end{subfigure}
\hfill
\begin{subfigure}[t]{0.49\textwidth}
\centering
\includegraphics[scale=1]{../../analysis/OFR_Analysis/20260916_SET02_EXP21/figure.pdf}
\subcaption{Data for filter in set 2 experiment 21 (16.09.2026).}
\label{subfig: Limonene filter SMPS/O3 data: filter 4}
\end{subfigure}
\hspace*{\fill}
\caption[Data for \glsname{LIMONENEf} filters]{\textbf{Data for \glsname{LIMONENEf} filters}. \textbf{\subref{subfig: Limonene filter SMPS/O3 data: filter 1}}: Data for the filter from set 2 experiment 22 (02.09.2026). Dotted lines indicate activating and deactivating the \glsname{O3f} source, respectively. Dash-dotted lines indicate the activation and deactivation of \glsname{LIMONENEf} flow. \textbf{\subref{subfig: Limonene filter SMPS/O3 data: filter 2} --- \subref{subfig: Limonene filter SMPS/O3 data: filter 4}}: as in \subref{subfig: Limonene filter SMPS/O3 data: filter 1}, but for set 2 experiments 19, 20 and 21, respectively.}
\label{fig: Limonene filter SMPS/O3 data}
\end{figure}
This is some reference to fig. \ref{fig: Limonene filter SMPS/O3 data}, fig. \ref{subfig: Limonene filter SMPS/O3 data: filter 1} and some reference to fig. \subref{subfig: Limonene correlation diagrams SMPS/O3 data}.
\begin{figure}[h]
\centering
\hspace*{\fill}
\begin{subfigure}[t]{0.499\textwidth}
\centering
\includegraphics[scale=1]{../../analysis/OFR_Analysis/20260903_SET02_EXP14/figure.pdf}
\subcaption{Data for filter in set 2 experiment 14 from 02.09.2026.}
\label{subfig: bPinene filter SMPS/O3 data: filter 1}
\end{subfigure}
\hfill
\begin{subfigure}[t]{0.49\textwidth}
\centering
\includegraphics[scale=1]{../../analysis/OFR_Analysis/20260904_SET02_EXP15/figure.pdf}
\subcaption{Data for filter in set 2 experiment 15 from 03.09.2026.}
\label{subfig: bPinene filter SMPS/O3 data: filter 2}
\end{subfigure}
\hspace*{\fill}
\vfill
\hspace*{\fill}
\begin{subfigure}[t]{0.49\textwidth}
\centering
\includegraphics[scale=1]{../../analysis/OFR_Analysis/20260910_SET02_EXP16/figure.pdf}
\subcaption{Data for filter in set 2 experiment 16 from 04.09.2026.}
\label{subfig: bPinene filter SMPS/O3 data: filter 3}
\end{subfigure}
\hfill
\begin{subfigure}[t]{0.49\textwidth}
\centering
\includegraphics[scale=1]{../../analysis/OFR_Analysis/20260914_SET02_EXP17/figure.pdf}
\subcaption{Data for filter in set 2 experiment 17 from 04.09.2026.}
\label{subfig: bPinene filter SMPS/O3 data: filter 4}
\end{subfigure}
\hspace*{\fill}
\caption[Data for \glsname{B-PINENEf} filters]{\textbf{Data for \glsname{B-PINENEf} filters}. \textbf{\subref{subfig: bPinene filter SMPS/O3 data: filter 1}}: Data for the filter from set 2 experiment 18 (02.09.2026). Dotted lines indicate activating and deactivating the \glsname{O3f} source, respectively. Dash-dotted lines indicate the activation and deactivation of \glsname{B-PINENEf} flow. \textbf{\subref{subfig: bPinene filter SMPS/O3 data: filter 2} --- \subref{subfig: bPinene filter SMPS/O3 data: filter 4}}: as in \subref{subfig: bPinene filter SMPS/O3 data: filter 1}, but for set 2 experiments 19 (03.09.2026), 20 (22.22.2222) and 21 (22.22.2222).}
\label{fig: bPinene filter SMPS/O3 data}
\end{figure}
\begin{figure}[h]
\centering
\hspace*{\fill}
\begin{subfigure}[t]{0.499\textwidth}
\centering
\includegraphics[scale=1]{../../analysis/OFR_Analysis/20260906_SET02_EXP14-15-16-17/figure.pdf}
\subcaption{Data for filter in set 2 experiment 14 from 02.09.2026.}
\label{subfig: aPinene correlation diagrams SMPS/O3 data}
\end{subfigure}
\hfill
\begin{subfigure}[t]{0.49\textwidth}
\centering
\includegraphics[scale=1]{../../analysis/OFR_Analysis/20260906_SET02_EXP14-15-16-17/figure.pdf}
\subcaption{Data for filter in set 2 experiment 15 from 03.09.2026.}
\label{subfig: bPinene correlation diagrams SMPS/O3 data}
\end{subfigure}
\hspace*{\fill}
\vfill
%\hspace*{\fill}
\begin{subfigure}[t]{0.49\textwidth}
\centering
\includegraphics[scale=1]{../../analysis/OFR_Analysis/20260906_SET02_EXP14-15-16-17/figure.pdf}
\subcaption{Data for filter in set 2 experiment 16 from 04.09.2026.}
\label{subfig: Limonene correlation diagrams SMPS/O3 data}
\end{subfigure}
\hspace*{\fill}
\caption[Correlation diagrams between \gls{VOCa} mass flows and \gls{O3f} concentrations.]{\textbf{Correlation diagrams between \gls{VOCa} mass flows and \gls{O3f} concentrations}. \textbf{\subref{subfig: aPinene correlation diagrams SMPS/O3 data}}: Filter mass flux \gls{MFLOWs} in dependency of ozone concentration for \glsname{A-PINENEf} filters. Deviation from \gls{O3f} baseline is computed as the average \glsname{O3f} values for \qty{5}{\minute} before \glsname{A-PINENEf} is switched on. \textbf{\subref{subfig: Limonene correlation diagrams SMPS/O3 data}}: As in \subref{subfig: aPinene correlation diagrams SMPS/O3 data}, but for \glsname{LIMONENEf}. \textbf{\subref{subfig: bPinene correlation diagrams SMPS/O3 data}}: As in \subref{subfig: aPinene correlation diagrams SMPS/O3 data}, but for \glsname{B-PINENEf}.}
\label{fig: filter correlation diagrams SMPS/O3 data}
\end{figure}
\end{document}
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% !TeX program = lualatex
%% ------------------------------------------------------------------%
%% SUBFILE MODE
\documentclass[../main/main.tex]{subfiles}
\graphicspath{{../graphics/}{../graphics/charts/}{../graphics/postscript_figures/}{../graphics7raster_images/}}
%% ------------------------------------------------------------------%
%% DOCUMENT
\begin{document}
\pagestyle{mainbody}
\chapter{Procedures}
\thispagestyle{mainbody}
All the procedures shown here are available on the server of the multiphase chemistry group of \gls{PSIa}, under the following paths:
\begin{enumerate}[before=\footnotesize]
\item{
\url{/Volumes/5505/People/David_Tschan/SOPs/experimental_procedures/01_SOA_Production.pdf}}
\item{
\url{/Volumes/5505/People/David_Tschan/SOPs/experimental_procedures/02a_TOC_Glassware_Cleaning.pdf}}
\item{
\url{/Volumes/5505/People/David_Tschan/SOPs/experimental_procedures/02b_TOC_Filter_Extraction.pdf}}
\item{
\url{/Volumes/5505/People/David_Tschan/SOPs/experimental_procedures/02c_TOC_Measurements.pdf}}
\item{
\url{/Volumes/5505/People/David_Tschan/SOPs/experimental_procedures/03_Solution_Preparation.pdf}}
\item{
\url{/Volumes/5505/People/David_Tschan/SOPs/experimental_procedures/04a_CWFTR_full_experimental_day.pdf}}
\item{
\url{/Volumes/5505/People/David_Tschan/SOPs/experimental_procedures/04b_CWFTR_half_experimental_day_part_A.pdf}}
\item{
\url{/Volumes/5505/People/David_Tschan/SOPs/experimental_procedures/04c_CWFTR_half_experimental_day_part_B.pdf}}
\item{
\url{/Volumes/5505/People/David_Tschan/SOPs/experimental_procedures/05_BTOF_Data_Analysis.pdf}}
\end{enumerate}
The procedures are included below in the same order as listed above:
\includepdf[pages=-, angle=-90, nup=1x2, scale=0.9]{/Volumes/5505/People/David_Tschan/SOPs/experimental_procedures/01_SOA_Production.pdf}
\includepdf[pages=-, angle=-90, nup=1x2, scale=0.9]{/Volumes/5505/People/David_Tschan/SOPs/experimental_procedures/02a_TOC_Glassware_Cleaning.pdf}
\includepdf[pages=-, angle=-90, nup=1x2, scale=0.9]{/Volumes/5505/People/David_Tschan/SOPs/experimental_procedures/02b_TOC_Filter_Extraction.pdf}
\includepdf[pages=-, angle=-90, nup=1x2, scale=0.9]{/Volumes/5505/People/David_Tschan/SOPs/experimental_procedures/02c_TOC_Measurements.pdf}
\includepdf[pages=-, angle=-90, nup=1x2, scale=0.9]{/Volumes/5505/People/David_Tschan/SOPs/experimental_procedures/03_Solution_Preparation.pdf}
\includepdf[pages=-, angle=-90, nup=1x2, scale=0.9]{/Volumes/5505/People/David_Tschan/SOPs/experimental_procedures/04a_CWFTR_full_experimental_day.pdf}
\includepdf[pages=-, angle=-90, nup=1x2, scale=0.9]{/Volumes/5505/People/David_Tschan/SOPs/experimental_procedures/04b_CWFTR_half_experimental_day_part_A.pdf}
\includepdf[pages=-, angle=-90, nup=1x2, scale=0.9]{/Volumes/5505/People/David_Tschan/SOPs/experimental_procedures/04c_CWFTR_half_experimental_day_part_B.pdf}
\includepdf[pages=-, angle=-90, nup=1x2, scale=0.9]{/Volumes/5505/People/David_Tschan/SOPs/experimental_procedures/05_BTOF_Data_Analysis.pdf}
\end{document}
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% !TeX program = lualatex
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%% SUBFILE MODE
\documentclass[../main/main.tex]{subfiles}
\graphicspath{{../graphics/}{../graphics/charts/}{../graphics/postscript_figures/}{../graphics7raster_images/}}
%% ------------------------------------------------------------------%
%% DOCUMENT
\begin{document}
\pagestyle{mainbody}
\chapter{Code}
\thispagestyle{mainbody}
All code used for this project is available under \url{git@gitea.psi.ch:tschan_d/code}.
\end{document}
chapters/introduction.pdf
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% !TeX program = lualatex
%% ------------------------------------------------------------------%
%% SUBFILE MODE
\documentclass[../main/main.tex]{subfiles}
\graphicspath{{../graphics/}{../graphics/charts/}{../graphics/postscript_figures/}{../graphics7raster_images/}}
%% ------------------------------------------------------------------%
%% DOCUMENT
\begin{document}
\pagestyle{mainbody}
\chapter{Results}
\thispagestyle{mainbody}
\begin{figure}[h]
\def\mathdefault#1{#1}\everymath=\expandafter{\the\everymath\displaystyle}
\centering
\begin{subfigure}{0.49\textwidth}
\centering
\input{../graphics/postscript_figures/SET02_EXP13.pgf}
\caption{Data for filter in set 2 experiment 13 from 02.09.2026.}
\label{subfig: aPinene filter SMPS/O3 data: filter 1}
\end{subfigure}
\hfill
\begin{subfigure}{0.49\textwidth}
\centering
\input{../graphics/postscript_figures/SET02_EXP14.pgf}
\caption{Data for filter in set 2 experiment 14 from 03.09.2026.}
\label{subfig: aPinene filter SMPS/O3 data: filter 2}
\end{subfigure}
\begin{subfigure}{0.49\textwidth}
\centering
\input{../graphics/postscript_figures/SET02_EXP15.pgf}
\caption{Data for filter in set 2 experiment 15 from 04.09.2026.}
\label{subfig: aPinene filter SMPS/O3 data: filter 3}
\end{subfigure}
\hfill
\begin{subfigure}{0.49\textwidth}
\centering
\input{../graphics/postscript_figures/SET02_EXP13-14-15.pgf}
\caption{Dependency of mass flux \gls{MFLOWs} on ozone concentration for the three filters in \ref{subfig: aPinene filter SMPS/O3 data: filter 1}, \ref{subfig: aPinene filter SMPS/O3 data: filter 2} and \ref{subfig: aPinene filter SMPS/O3 data: filter 3}.}
\label{subfig: aPinene filter SMPS/O3 data: correlation}
\end{subfigure}
\hfill
\caption[Bla Bla Bla]{Data for \gls{A-PINENEf} filters. \ref{subfig: aPinene filter SMPS/O3 data: filter 1}: Data for the filter from set 2 experiment 13 from 02.09.2026. Dotted lines indicate activating and deactivating the \gls{O3f} source, respectively. Dash-dotted lines indicate the activation and deactivation of \gls{A-PINENEf} flow. \ref{subfig: aPinene filter SMPS/O3 data: filter 2}: as in \ref{subfig: aPinene filter SMPS/O3 data: filter 1}, but for set 2 experiment 14 from 03.09.2026. \ref{subfig: aPinene filter SMPS/O3 data: filter 3}: As in \ref{subfig: aPinene filter SMPS/O3 data: filter 3}, but for set 2 experiment 15 from 04.09.2026. \ref{subfig: aPinene filter SMPS/O3 data: correlation}: Filter mass flux \gls{MFLOWs} in dependency of ozone concentration for the three filters in \ref{subfig: aPinene filter SMPS/O3 data: filter 1}, \ref{subfig: aPinene filter SMPS/O3 data: filter 2} and \ref{subfig: aPinene filter SMPS/O3 data: filter 3}. Deviation from \gls{O3f} baseline is computed as the average \gls{O3f} values for \qty{5}{\minute} before \gls{A-PINENEf} is switched on.}
\label{fig: aPinene filter SMPS/O3 data}
\end{figure}
Computing the mass on the filter:
\begin{equation}
m_{\textnormal{F}}=\int_{t_{\textnormal{on}}}^{t_{\textnormal{off}}}\gls{MFLOWs}\,\der{t}\approx\sum_{\textnormal{Samples}}\gls{MFLOWs}_{i}\Delta t_{i}
\end{equation}
\end{document}
config/glossary.tex
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description={non-dispersive infrared monitor}
}
\newglossaryentry{CIMSa}{
type=\acronymtype,
first={chemical ionisation mass spectrometer (CIMS)},
firstplural={chemical ionisation mass spectrometers (CIMSs)},
name={CIMS},
description={chemical ionisation mass spectrometer}
}
\newglossaryentry{BTOFa}{
type=\acronymtype,
first={bipolar time-of-flight (BTOF)},
name={BTOF},
description={bipolar time-of-flight}
}
\newglossaryentry{ToF CIMSa}{
type=\acronymtype,
first={time-of-flight (ToF) chemical ionization mass spectrometer (CIMS) (ToF I-CIMS)},
@@ -217,6 +232,14 @@
description={time-of-flight chemical ionization mass spectrometer}
}
\newglossaryentry{BTOF-CIMSa}{
type=\acronymtype,
first={\gls{BTOFa} \gls{CIMSa} (BTOF-CIMS)},
firstplural={\glsfirst{BTOFa} \glsfirstplural{CIMSa} (BTOF-CIMSs)},
name={BTOF-CIMS},
description={bipolar time-of-flight chemical ionisation mass spectrometer}
}
\newglossaryentry{PSIa}{
type=\acronymtype,
first={Paul-Scherrer Institute (PSI)},
@@ -300,6 +323,34 @@
description={Scanning mobility particle sizer}
}
\newglossaryentry{TOCa}{
type=\acronymtype,
first={total organic carbon (TOC)},
name={TOC},
description={Total organic carbon}
}
\newglossaryentry{NPOCa}{
type=\acronymtype,
first={non-purgeable organic carbon (NPOC)},
name={NPOC},
description={Non-purgeable organic carbon}
}
\newglossaryentry{ICa}{
type=\acronymtype,
first={inorganic carbon (IC)},
name={IC},
description={inorganic carbon}
}
\newglossaryentry{TCa}{
type=\acronymtype,
first={total carbon (TC)},
name={TC},
description={Total carbon}
}
%% ------------------------------------------------------------------%
%% GLOSSARY ENTRIES
config/preamble.tex
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\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage[english]{babel} % Language
\usepackage[english=british]{csquotes} % Quotation
\usepackage[german=swiss]{csquotes} % Quotation
\MakeAutoQuote{«}{»} % (Shift) + opt + ,
\usepackage{fontspec}
@@ -81,11 +81,15 @@
\usepackage[arrows=pgf-filled, version=4]{mhchem}
\usepackage{multicol}
\usepackage{nameref}
\usepackage{pdfpages}
\usepackage{pgfplots}
\usepackage{printlen}
\usepackage{setspace}
\usepackage[free-standing-units=true]{siunitx}
\usepackage{subcaption}
\usepackage[subrefformat=parens, labelformat=parens]{subcaption}
\renewcommand{\thesubfigure}{\alph{subfigure}}
\captionsetup[subfigure]{labelfont={normal, bf}}
\usepackage{scrwfile}
\usepackage{tabularray}
\usepackage{tikz}
config/species.bib
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description={1-methyl-4-(prop-1-en-2-yl)cyclohex-1-ene}
}
@entry{O2f,
name={Molecular oxygen},
text={molecular oxygen},
formulat={\ensuremath{\ce{O2}}},
first={molecular oxygen (\ensuremath{\ce{O2}})},
description={}
}
@entry{N2f,
name={Molecular nitrogen},
text={molecular nitrogen},
formulat={\ensuremath{\ce{N2}}},
first={molecular nitrogen (\ensuremath{\ce{N2}})},
description={}
}
%% ------------------------------------------------------------------%
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main/main.ist
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% makeindex style file created by the glossaries package
% for document 'main' on 2026-9-5
% for document 'main' on 2026-9-17
actual '?'
encap '|'
level '!'
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\mbox{}
\vfill
\small{Title page image courtesy to \href{https://unsplash.com/@asoggetti}{Alessio Soggetti} from \href{https://unsplash.com/photos/mountains-covered-with-fogs-gdE-5Oui1Y0?utm_source=unsplash&utm_medium=referral&utm_content=creditCopyText}{unsplash.com} (accessed on 26.05.2026 10:00). The font used in figures including technical drawings (figs. ...) was accessed from \href{https://github.com/hikikomori82/osifont}{https://github.com/hikikomori82/osifont} on 06.08.2026 09:25 and is distributed under the GNU GPL V3 + FE license. The beaker in figure \ref{methods: fig: solution preparation} was adapted from «Diogo Losch De Oliveira (2026). Beakers [Illustration]. CC-BY 4.0. SciDraw.io. https://scidraw.io/drawing/beakers-ba8583ed» (accessed 10.08.2026 16:16)}
\small{Title page image courtesy to \href{https://unsplash.com/@asoggetti}{Alessio Soggetti} from \href{https://unsplash.com/photos/mountains-covered-with-fogs-gdE-5Oui1Y0?utm_source=unsplash&utm_medium=referral&utm_content=creditCopyText}{unsplash.com} (accessed on 26.05.2026 10:00).
The font used in figures including technical drawings (figs. ...) was accessed from \href{https://github.com/hikikomori82/osifont}{https://github.com/hikikomori82/osifont} on 06.08.2026 09:25 and is distributed under the GNU GPL V3 + FE license.
The beaker in figure \ref{methods: fig: solution preparation} was adapted from «Diogo Losch De Oliveira (2026). Beakers [Illustration]. CC-BY 4.0. SciDraw.io. https://scidraw.io/drawing/beakers-ba8583ed» (accessed 10.08.2026 16:16)}
\pagebreak
\pagestyle{mainbody}
% A quote to set the scene...
\cleardoublepage
\pagestyle{empty}
\vspace*{\fill}
\blockquote[William W. Purkey, 2003][]{
You've gotta dance like there's nobody watching, love like you'll never be hurt, sing like there's nobody listening, and live like it's heaven on earth.
}
\vspace*{\fill}
\cleardoublepage
\pagestyle{mainbody}
\tableofcontents
\listoftables
\listoffigures
@@ -81,14 +96,16 @@
%\linenumbers
%\doublespacing
\subfile{../chapters/introduction.tex}
\subfile{../chapters/methods.tex}
%\subfile{../chapters/results.tex}
%\subfile{../chapters/discussion.tex}
%\subfile{../chapters/conclusion.tex}
%\subfile{../chapters/acknowledgements.tex}
\subfile{../chapters/01_introduction.tex}
\subfile{../chapters/02_methods.tex}
\subfile{../chapters/03_results.tex}
\subfile{../chapters/04_discussion.tex}
\subfile{../chapters/05_conclusion.tex}
\subfile{../chapters/06_acknowledgements.tex}
\appendix
\subfile{../chapters/A_procedures.tex}
\subfile{../chapters/B_code.tex}
%% ------------------------------------------------------------------%