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Feature/pixi #10

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labrec_b wants to merge 6 commits from feature/pixi into main
pull from: feature/pixi
merge into: :main
Conversation 0 Commits 6 Files Changed 26
+6974 -33
26 changed files with 6974 additions and 33 deletions
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.gitattributes
+2
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@@ -0,0 +1,2 @@
# SCM syntax highlighting & preventing 3-way merges
pixi.lock merge=binary linguist-language=YAML linguist-generated=true -diff
.gitignore
+3
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@@ -174,3 +174,6 @@ cython_debug/
# PyPI configuration file
.pypirc
# pixi environments
.pixi/*
!.pixi/config.toml
bin/start_service.sh
+6 -17
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@@ -19,29 +19,18 @@ SVC_DIR=${SERVICES_DIR}/${SVC_NAME_LOWER}
# TODO: only for dev
export EPICS_CA_ADDR_LIST='sls-cagw.psi.ch:5062 129.129.146.88'
# TODO: what do we need from here?
# activate conda environment
. /opt/gfa/python-3.10/latest/bin/activate
# . /opt/gfa/python-3.10/latest/bin/activate
# TODO: building the .venv should be done in CICD (only when uv.lock changes)
pip install uv
# to run `uv ...`
PATH="${HOME}/.local/bin:${PATH}"
export UV_CACHE_DIR="/sls/bd/hla/.cache/uv"
export UV_LINK_MODE="copy"
export PIXI_CACHE_DIR="/sls/bd/hla/.cache/pixi"
APP_DIR=${SVC_DIR}/current/app
echo "App dir: ${APP_DIR}"
# TODO: do we need this? pyepics is not PSI specific...
# (re)create venv using site-packages -- uses system-wide installed epics
# uv venv --system-site-packages ${APP_DIR}/.venv --clear
# install custom python packages from pyproject.toml / uv.lock
uv sync --frozen --project ${APP_DIR}
# activate .venv, this works in conjunction with the conda environment
source ${APP_DIR}/.venv/bin/activate
cd ${APP_DIR}
# TODO: use `exec python3 ...` here?
python -u -B -m agebd_${SVC_NAME_LOWER_UNDERSCORES}.main
# TODO: use `exec pixi run python ...` here?
pixi run python -u -B -m agebd_${SVC_NAME_LOWER_UNDERSCORES}.main
# TODO: remove: cicd test 10
docs/cicd_runner.md
+3
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@@ -28,6 +28,9 @@ cd /tmp
curl -LO https://nodejs.org/dist/v20.11.1/node-v20.11.1-linux-x64.tar.xz
tar -xf node-v20.11.1-linux-x64.tar.xz --strip-components=2 -C ~/.local/bin/ node-v20.11.1-linux-x64/bin/
rm node-v20.11.1-linux-x64.tar.xz
# Install pixi
curl -fsSL https://pixi.sh/install.sh | sh
```
## Manually run the runner
packages/agebd/pixi.lock
Generated
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packages/agebd/pyproject.toml
+33
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@@ -6,6 +6,7 @@ requires-python = "==3.10.*"
dependencies = [
"h5py>=3.16.0",
"pyepics>=3.5.10",
"typer>=0.23.2",
]
@@ -35,3 +36,35 @@ line-length = 100
[tool.ruff.lint]
# use isort to sort imports
extend-select = ["I"]
### PIXI ###
[tool.pixi.workspace]
name = "agebd"
channels = ["conda-forge"]
platforms = ["linux-64"]
version = "0.1.0"
[tool.pixi.tasks]
[tool.pixi.dependencies]
python = "3.10.*"
h5py = ">=3.16.0,<4"
typer = "*"
pyepics = ">=3.5.10,<4"
[tool.pixi.pypi-dependencies]
agebd = { path = ".", editable = true }
[tool.pixi.feature.dev.dependencies]
pyright = "*"
ruff = "*"
twine = "*"
pytest = ">=9.1.1,<10"
[tool.pixi.feature.dev.tasks]
test = "pytest"
format = "ruff format"
[tool.pixi.environments]
dev = ["dev"]
packages/agebd/src/agebd/service/pvs.py
-1
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@@ -16,4 +16,3 @@ class BasePVs:
self.abort = pv_factory(f'AGEBD-MASTER:{svc}-ABORT.VAL')
self.abortreq = pv_factory(f'AGEBD-MASTER:{svc}-ABORT-REQ.VAL')
# fmt: on
packages/agebd/uv.lock
Generated
+24
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@@ -8,6 +8,7 @@ version = "0.1.0"
source = { editable = "." }
dependencies = [
{ name = "h5py" },
{ name = "pyepics" },
{ name = "typer" },
]
@@ -22,6 +23,7 @@ dev = [
[package.metadata]
requires-dist = [
{ name = "h5py", specifier = ">=3.16.0" },
{ name = "pyepics", specifier = ">=3.5.10" },
{ name = "typer", specifier = ">=0.23.2" },
]
@@ -394,6 +396,19 @@ wheels = [
{ url = "https://files.pythonhosted.org/packages/0c/c3/44f3fbbfa403ea2a7c779186dc20772604442dde72947e7d01069cbe98e3/pycparser-3.0-py3-none-any.whl", hash = "sha256:b727414169a36b7d524c1c3e31839a521725078d7b2ff038656844266160a992", size = 48172, upload-time = "2026-01-21T14:26:50.693Z" },
]
[[package]]
name = "pyepics"
version = "3.5.10"
source = { registry = "https://pypi.org/simple" }
dependencies = [
{ name = "numpy" },
{ name = "pyparsing" },
]
sdist = { url = "https://files.pythonhosted.org/packages/69/57/29e1e9ef11ba2a3419f489946ae1d8190025a1e4f4e1c1686758bb2b6e0a/pyepics-3.5.10.tar.gz", hash = "sha256:f390cf9be40aba757b9528888114bc14d8db01086d0c93914720b1772460375b", size = 6150481, upload-time = "2026-05-20T18:44:36.336Z" }
wheels = [
{ url = "https://files.pythonhosted.org/packages/d6/36/e517fd83bd97d6bfe4105e0c6b322070c5cc36fb56a8fab2866e319f8804/pyepics-3.5.10-py3-none-any.whl", hash = "sha256:c9fac2c54f2b595268e66fc348cf5ec24e63718e7dbd07d73d1b37d4da6bfee1", size = 5332376, upload-time = "2026-05-20T18:44:34.242Z" },
]
[[package]]
name = "pygments"
version = "2.20.0"
@@ -403,6 +418,15 @@ wheels = [
{ url = "https://files.pythonhosted.org/packages/f4/7e/a72dd26f3b0f4f2bf1dd8923c85f7ceb43172af56d63c7383eb62b332364/pygments-2.20.0-py3-none-any.whl", hash = "sha256:81a9e26dd42fd28a23a2d169d86d7ac03b46e2f8b59ed4698fb4785f946d0176", size = 1231151, upload-time = "2026-03-29T13:29:30.038Z" },
]
[[package]]
name = "pyparsing"
version = "3.3.2"
source = { registry = "https://pypi.org/simple" }
sdist = { url = "https://files.pythonhosted.org/packages/f3/91/9c6ee907786a473bf81c5f53cf703ba0957b23ab84c264080fb5a450416f/pyparsing-3.3.2.tar.gz", hash = "sha256:c777f4d763f140633dcb6d8a3eda953bf7a214dc4eff598413c070bcdc117cbc", size = 6851574, upload-time = "2026-01-21T03:57:59.36Z" }
wheels = [
{ url = "https://files.pythonhosted.org/packages/10/bd/c038d7cc38edc1aa5bf91ab8068b63d4308c66c4c8bb3cbba7dfbc049f9c/pyparsing-3.3.2-py3-none-any.whl", hash = "sha256:850ba148bd908d7e2411587e247a1e4f0327839c40e2e5e6d05a007ecc69911d", size = 122781, upload-time = "2026-01-21T03:57:55.912Z" },
]
[[package]]
name = "pyright"
version = "1.1.411"
pixi.lock
Generated
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pixi.toml
+50
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@@ -0,0 +1,50 @@
[workspace]
authors = ["Benjamin Labrecque <benjamin.labrecque@psi.ch>"]
channels = ["conda-forge"]
name = "sls_hla_framework_bd"
platforms = ["linux-64"]
version = "0.1.0"
[tasks]
[dependencies]
python = "3.10.*"
numpy = ">=1.22.6,<2"
scipy = ">=1.15.2,<2"
matplotlib = ">=3.10.9,<4"
[pypi-dependencies]
agebd = { path = "packages/agebd", editable = true }
sls2om = { version = "==0.4.0", index = "https://gitea.psi.ch/api/packages/sls/pypi/simple/" }
agebd-dbpm3curr = { path = "services/dbpm3curr/current/app", editable = true }
agebd-injectionguard = { path = "services/injectionguard/current/app", editable = true }
agebd-master = { path = "services/master/current/app", editable = true }
agebd-nturns = { path = "services/nturns/current/app", editable = true }
agebd-orbitbump = { path = "services/orbitbump/current/app", editable = true }
agebd-plots = { path = "services/plots/current/app", editable = true }
agebd-postmortemlog = { path = "services/postmortemlog/current/app", editable = true }
agebd-scrubbing = { path = "services/scrubbing/current/app", editable = true }
agebd-shifttool = { path = "services/shifttool/current/app", editable = true }
agebd-taubpm = { path = "services/taubpm/current/app", editable = true }
agebd-taupct = { path = "services/taupct/current/app", editable = true }
agebd-timing = { path = "services/timing/current/app", editable = true }
agebd-topuptool = { path = "services/topuptool/current/app", editable = true }
agebd-tune = { path = "services/tune/current/app", editable = true }
agebd-tunebump = { path = "services/tunebump/current/app", editable = true }
agebd-tunefbx = { path = "services/tunefbx/current/app", editable = true }
agebd-tunefby = { path = "services/tunefby/current/app", editable = true }
nafflib = ">=2.1.1, <3"
[feature.test.dependencies]
pytest = "*"
[feature.test.tasks.test]
cmd = [
"pytest",
# allows all test files to be named the same (test_app.py)
"--import-mode=importlib",
]
env = { AGEBD_ENV = "local" }
[environments]
test = ["test"]
services/dbpm3curr/current/app/pyproject.toml
+1 -1
View File
@@ -6,7 +6,7 @@ requires-python = "==3.10.*"
dependencies = [
"agebd",
"pyepics>=3.5.8",
"numpy>=2.0.2",
"numpy>=1.22.6,<2.0.0",
]
[dependency-groups]
services/injectionguard/current/app/pyproject.toml
+1 -1
View File
@@ -6,7 +6,7 @@ requires-python = "==3.10.*"
dependencies = [
"agebd",
"pyepics>=3.5.8",
"numpy>=2.0.2",
"numpy>=1.22.6,<2.0.0",
]
[dependency-groups]
services/master/current/app/pixi.lock
Generated
+974
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@@ -0,0 +1,974 @@
version: 7
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- __glibc=2.28
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services/master/current/app/pyproject.toml
+29
View File
@@ -46,3 +46,32 @@ extend-select = ["I"]
[tool.ruff.lint.isort]
known-first-party = ["agebd"]
### PIXI ###
[tool.pixi.workspace]
name = "agebd-master"
channels = ["conda-forge"]
platforms = ["linux-64"]
version = "0.1.0"
[tool.pixi.tasks]
[tool.pixi.dependencies]
python = "3.10.*"
pyepics = ">=3.5.10,<4"
pyyaml = ">=6.0.3,<7"
[tool.pixi.pypi-dependencies]
agebd-master = { path = ".", editable = true }
[tool.pixi.feature.dev.dependencies]
ruff = "*"
pytest = ">=9.1.1,<10"
[tool.pixi.feature.dev.tasks]
test = "pytest"
format = "ruff format"
[tool.pixi.environments]
dev = ["dev"]
services/nturns/current/app/pyproject.toml
+1 -1
View File
@@ -6,7 +6,7 @@ requires-python = "==3.10.*"
dependencies = [
"agebd",
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"numpy>=2.0.2",
"numpy>=1.22.6,<2.0.0",
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]
services/postmortemlog/current/app/pyproject.toml
+1 -1
View File
@@ -7,7 +7,7 @@ dependencies = [
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"matplotlib>=3.10.9",
"numpy>=2.0.2",
"numpy>=1.22.6,<2.0.0",
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]
services/scrubbing/current/app/pyproject.toml
+1 -1
View File
@@ -6,7 +6,7 @@ requires-python = "==3.10.*"
dependencies = [
"agebd",
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"numpy>=2.2.6",
"numpy>=1.22.6,<2.0.0",
]
[dependency-groups]
services/taubpm/current/app/pyproject.toml
+1 -1
View File
@@ -6,7 +6,7 @@ requires-python = "==3.10.*"
dependencies = [
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"numpy>=2.0.2",
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]
[dependency-groups]
services/taupct/current/app/pyproject.toml
+1 -1
View File
@@ -6,7 +6,7 @@ requires-python = "==3.10.*"
dependencies = [
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services/timing/current/app/pyproject.toml
+1 -1
View File
@@ -6,7 +6,7 @@ requires-python = "==3.10.*"
dependencies = [
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services/topuptool/current/app/pyproject.toml
+1 -1
View File
@@ -6,7 +6,7 @@ requires-python = "==3.10.*"
dependencies = [
"agebd",
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"numpy>=2.2.6",
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]
[dependency-groups]
services/tune/current/app/pyproject.toml
+2 -2
View File
@@ -7,9 +7,9 @@ dependencies = [
"agebd",
"pyepics>=3.5.8",
"nafflib>=2.1.1",
"numpy>=2.2.6",
"numpy>=1.22.6,<2.0.0",
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[dependency-groups]
services/tune/current/app/uv.lock
Generated
+3
View File
@@ -8,12 +8,14 @@ version = "0.1.0"
source = { editable = "../../../../packages/agebd" }
dependencies = [
{ name = "h5py" },
{ name = "pyepics" },
{ name = "typer" },
]
[package.metadata]
requires-dist = [
{ name = "h5py", specifier = ">=3.16.0" },
{ name = "pyepics", specifier = ">=3.5.10" },
{ name = "typer", specifier = ">=0.23.2" },
]
@@ -22,6 +24,7 @@ dev = [
{ name = "pyright", specifier = ">=1.1.410" },
{ name = "pytest", specifier = ">=8.4.2" },
{ name = "ruff", specifier = ">=0.15.19" },
{ name = "twine", specifier = ">=6.2.0" },
]
[[package]]
services/tunebump/current/app/pyproject.toml
+2 -2
View File
@@ -6,8 +6,8 @@ requires-python = "==3.10.*"
dependencies = [
"agebd",
"pyepics>=3.5.8",
"numpy>=2.2.6",
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"scipy>=1.15.2",
]
[dependency-groups]
services/tunefbx/current/app/pyproject.toml
+1 -1
View File
@@ -6,7 +6,7 @@ requires-python = "==3.10.*"
dependencies = [
"agebd",
"pyepics>=3.5.8",
"numpy>=2.2.6",
"numpy>=1.22.6,<2.0.0",
]
[dependency-groups]
services/tunefby/current/app/pyproject.toml
+1 -1
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@@ -6,7 +6,7 @@ requires-python = "==3.10.*"
dependencies = [
"agebd",
"pyepics>=3.5.8",
"numpy>=2.2.6",
"numpy>=1.22.6,<2.0.0",
]
[dependency-groups]