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chore: use sls2om package from gitea sls org
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Benjamin Labrecque
2026-07-24 14:09:34 +02:00
parent 9e7d5dfa7c
commit c341972362
43 changed files with 875 additions and 15 deletions
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cli/pyproject.toml
+2
View File
@@ -26,6 +26,8 @@ dev = [
"ipython>=8.39.0",
"pyright>=1.1.410",
"pytest>=8.4.2",
"pytest-env>=1.7.0",
"pytest-mock>=3.15.1",
"ruff>=0.15.19",
]
cli/tests/fixtures/expected_output/services/test-service/current/app/pyproject.toml
Vendored
+2
View File
@@ -11,6 +11,8 @@ dependencies = [
[dependency-groups]
dev = [
"pytest>=8.4.2",
"pytest-env>=1.7.0",
"pytest-mock>=3.15.1",
"ruff>=0.15.20",
]
cli/uv.lock
Generated
+20
View File
@@ -23,6 +23,8 @@ requires-dist = [
dev = [
{ name = "pyright", specifier = ">=1.1.410" },
{ name = "pytest", specifier = ">=8.4.2" },
{ name = "pytest-env", specifier = ">=1.7.0" },
{ name = "pytest-mock", specifier = ">=3.15.1" },
{ name = "ruff", specifier = ">=0.15.19" },
{ name = "twine", specifier = ">=6.2.0" },
]
@@ -49,6 +51,8 @@ dev = [
{ name = "ipython" },
{ name = "pyright" },
{ name = "pytest" },
{ name = "pytest-env" },
{ name = "pytest-mock" },
{ name = "ruff" },
]
@@ -71,6 +75,8 @@ dev = [
{ name = "ipython", specifier = ">=8.39.0" },
{ name = "pyright", specifier = ">=1.1.410" },
{ name = "pytest", specifier = ">=8.4.2" },
{ name = "pytest-env", specifier = ">=1.7.0" },
{ name = "pytest-mock", specifier = ">=3.15.1" },
{ name = "ruff", specifier = ">=0.15.19" },
]
@@ -716,6 +722,20 @@ wheels = [
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{ name = "python-dotenv" },
{ name = "tomli" },
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[[package]]
name = "pytest-mock"
version = "3.15.1"
justfile
+12 -2
View File
@@ -6,8 +6,18 @@ default:
@just --list
# Run tests for ALL services (using find loop)
test-all:
find services -name "pyproject.toml" -execdir uv run pytest \;
test-all: test-all-services
cd cli && uv run pytest
cd packages/agebd && uv run pytest
test-all-services:
#!/usr/bin/env bash
for dir in services/*/current/app; do
if [ -d "$dir" ]; then
(cd "$dir" && uv run pytest)
fi
done
# find services -name "pyproject.toml" -execdir uv run pytest \;
# Sync all envs
sync-all:
packages/agebd/pyproject.toml
+2
View File
@@ -15,6 +15,8 @@ dependencies = [
dev = [
"pyright>=1.1.410",
"pytest>=8.4.2",
"pytest-env>=1.7.0",
"pytest-mock>=3.15.1",
"ruff>=0.15.19",
"twine>=6.2.0",
]
packages/agebd/uv.lock
Generated
+39
View File
@@ -16,6 +16,8 @@ dependencies = [
dev = [
{ name = "pyright" },
{ name = "pytest" },
{ name = "pytest-env" },
{ name = "pytest-mock" },
{ name = "ruff" },
{ name = "twine" },
]
@@ -31,6 +33,8 @@ requires-dist = [
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{ name = "pytest", specifier = ">=8.4.2" },
{ name = "pytest-env", specifier = ">=1.7.0" },
{ name = "pytest-mock", specifier = ">=3.15.1" },
{ name = "ruff", specifier = ">=0.15.19" },
{ name = "twine", specifier = ">=6.2.0" },
]
@@ -458,6 +462,41 @@ wheels = [
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[[package]]
name = "pywin32-ctypes"
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services/dbpm3curr/current/app/pyproject.toml
+2
View File
@@ -12,6 +12,8 @@ dependencies = [
[dependency-groups]
dev = [
"pytest>=8.4.2",
"pytest-env>=1.7.0",
"pytest-mock>=3.15.1",
"ruff>=0.15.20",
]
services/dbpm3curr/current/app/uv.lock
Generated
+44
View File
@@ -8,12 +8,14 @@ version = "0.1.0"
source = { editable = "../../../../packages/agebd" }
dependencies = [
{ name = "h5py" },
{ name = "pyepics" },
{ name = "typer" },
]
[package.metadata]
requires-dist = [
{ name = "h5py", specifier = ">=3.16.0" },
{ name = "pyepics", specifier = ">=3.5.10" },
{ name = "typer", specifier = ">=0.23.2" },
]
@@ -21,7 +23,10 @@ requires-dist = [
dev = [
{ name = "pyright", specifier = ">=1.1.410" },
{ name = "pytest", specifier = ">=8.4.2" },
{ name = "pytest-env", specifier = ">=1.7.0" },
{ name = "pytest-mock", specifier = ">=3.15.1" },
{ name = "ruff", specifier = ">=0.15.19" },
{ name = "twine", specifier = ">=6.2.0" },
]
[[package]]
@@ -37,6 +42,8 @@ dependencies = [
[package.dev-dependencies]
dev = [
{ name = "pytest" },
{ name = "pytest-env" },
{ name = "pytest-mock" },
{ name = "ruff" },
]
@@ -50,6 +57,8 @@ requires-dist = [
[package.metadata.requires-dev]
dev = [
{ name = "pytest", specifier = ">=8.4.2" },
{ name = "pytest-env", specifier = ">=1.7.0" },
{ name = "pytest-mock", specifier = ">=3.15.1" },
{ name = "ruff", specifier = ">=0.15.20" },
]
@@ -220,6 +229,41 @@ wheels = [
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{ name = "python-dotenv" },
{ name = "tomli" },
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services/injectionguard/current/app/pyproject.toml
+2
View File
@@ -12,6 +12,8 @@ dependencies = [
[dependency-groups]
dev = [
"pytest>=8.4.2",
"pytest-env>=1.7.0",
"pytest-mock>=3.15.1",
"ruff>=0.15.20",
]
services/injectionguard/current/app/uv.lock
Generated
+44
View File
@@ -8,12 +8,14 @@ version = "0.1.0"
source = { editable = "../../../../packages/agebd" }
dependencies = [
{ name = "h5py" },
{ name = "pyepics" },
{ name = "typer" },
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{ name = "pyepics", specifier = ">=3.5.10" },
{ name = "typer", specifier = ">=0.23.2" },
]
@@ -21,7 +23,10 @@ requires-dist = [
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{ name = "pyright", specifier = ">=1.1.410" },
{ name = "pytest", specifier = ">=8.4.2" },
{ name = "pytest-env", specifier = ">=1.7.0" },
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{ name = "ruff", specifier = ">=0.15.19" },
{ name = "twine", specifier = ">=6.2.0" },
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@@ -37,6 +42,8 @@ dependencies = [
[package.dev-dependencies]
dev = [
{ name = "pytest" },
{ name = "pytest-env" },
{ name = "pytest-mock" },
{ name = "ruff" },
]
@@ -50,6 +57,8 @@ requires-dist = [
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{ name = "pytest-env", specifier = ">=1.7.0" },
{ name = "pytest-mock", specifier = ">=3.15.1" },
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@@ -220,6 +229,41 @@ wheels = [
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services/master/current/app/pyproject.toml
+2
View File
@@ -12,6 +12,8 @@ dependencies = [
[dependency-groups]
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"pytest-env>=1.7.0",
"pytest-mock>=3.15.1",
"ruff>=0.15.20",
]
services/master/current/app/uv.lock
Generated
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View File
@@ -8,12 +8,14 @@ version = "0.1.0"
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{ name = "pyepics" },
{ name = "typer" },
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{ name = "pyepics", specifier = ">=3.5.10" },
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@@ -21,7 +23,10 @@ requires-dist = [
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@@ -37,6 +42,8 @@ dependencies = [
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[[package]]
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services/topuptool/current/app/pyproject.toml
+2
View File
@@ -12,6 +12,8 @@ dependencies = [
[dependency-groups]
dev = [
"pytest>=8.4.2",
"pytest-env>=1.7.0",
"pytest-mock>=3.15.1",
"ruff>=0.15.20",
]
services/topuptool/current/app/uv.lock
Generated
+44
View File
@@ -8,12 +8,14 @@ version = "0.1.0"
source = { editable = "../../../../packages/agebd" }
dependencies = [
{ name = "h5py" },
{ name = "pyepics" },
{ name = "typer" },
]
[package.metadata]
requires-dist = [
{ name = "h5py", specifier = ">=3.16.0" },
{ name = "pyepics", specifier = ">=3.5.10" },
{ name = "typer", specifier = ">=0.23.2" },
]
@@ -21,7 +23,10 @@ requires-dist = [
dev = [
{ name = "pyright", specifier = ">=1.1.410" },
{ name = "pytest", specifier = ">=8.4.2" },
{ name = "pytest-env", specifier = ">=1.7.0" },
{ name = "pytest-mock", specifier = ">=3.15.1" },
{ name = "ruff", specifier = ">=0.15.19" },
{ name = "twine", specifier = ">=6.2.0" },
]
[[package]]
@@ -37,6 +42,8 @@ dependencies = [
[package.dev-dependencies]
dev = [
{ name = "pytest" },
{ name = "pytest-env" },
{ name = "pytest-mock" },
{ name = "ruff" },
]
@@ -50,6 +57,8 @@ requires-dist = [
[package.metadata.requires-dev]
dev = [
{ name = "pytest", specifier = ">=8.4.2" },
{ name = "pytest-env", specifier = ">=1.7.0" },
{ name = "pytest-mock", specifier = ">=3.15.1" },
{ name = "ruff", specifier = ">=0.15.20" },
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@@ -220,6 +229,41 @@ wheels = [
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[[package]]
name = "pytest-env"
version = "1.7.0"
source = { registry = "https://pypi.org/simple" }
dependencies = [
{ name = "pytest" },
{ name = "python-dotenv" },
{ name = "tomli" },
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[[package]]
name = "rich"
version = "15.0.0"
services/tune/current/app/pyproject.toml
+13 -1
View File
@@ -5,6 +5,7 @@ description = "AGEBD-TUNE Service"
requires-python = "==3.10.*"
dependencies = [
"agebd",
"sls2om==0.1.0",
"pyepics>=3.5.8",
"nafflib>=2.1.1",
"numpy>=2.2.6",
@@ -15,6 +16,8 @@ dependencies = [
[dependency-groups]
dev = [
"pytest>=8.4.2",
"pytest-env>=1.7.0",
"pytest-mock>=3.15.1",
"ruff>=0.15.20",
]
@@ -22,6 +25,7 @@ dev = [
# Path is relative to where agebd package is deployed on hla
# machines (see CI/CD in .gitea/workflows)
agebd = { path = "../../../../packages/agebd", editable = true }
sls2om = { index = "gitea-sls" }
[build-system]
requires = ["hatchling"]
@@ -30,6 +34,11 @@ build-backend = "hatchling.build"
[tool.uv]
package = true
[[tool.uv.index]]
# SLS Packages on Gitea
name = "gitea-sls"
url = "https://gitea.psi.ch/api/packages/sls/pypi/simple/"
[tool.pytest.ini_options]
pythonpath = ["src"]
env = [
@@ -48,4 +57,7 @@ line-length = 100
extend-select = ["I"]
[tool.ruff.lint.isort]
known-first-party = ["agebd"]
known-first-party = [
"agebd",
"sls2om",
]
services/tune/current/app/src/agebd_tune/service.py
+1 -3
View File
@@ -6,9 +6,6 @@ from time import sleep, time
import nafflib
import numpy as np
from epics import PV
# TODO: handle how to incorporate this into the framework
from OMFacility import Facility
from scipy.fft import fft
from sklearn.utils.extmath import randomized_svd
@@ -16,6 +13,7 @@ from agebd.pv import get_pv_class
from agebd.service.base import BaseService
from agebd.service.pvs import BasePVs
from agebd.utils import printgetversion
from sls2om.OMFacility import Facility
__version__ = printgetversion(__file__)
services/tune/current/app/tests/test_app.py
+3 -1
View File
@@ -1,7 +1,9 @@
from agebd_tune import PVs, Service
def test_app():
def test_app(mocker):
mocker.patch("agebd_tune.service.Facility")
service_name = "DUMMY"
pvs = PVs(service_name=service_name)
service = Service(name=service_name, pvs=pvs)
services/tune/current/app/uv.lock
Generated
+58
View File
@@ -8,12 +8,14 @@ version = "0.1.0"
source = { editable = "../../../../packages/agebd" }
dependencies = [
{ name = "h5py" },
{ name = "pyepics" },
{ name = "typer" },
]
[package.metadata]
requires-dist = [
{ name = "h5py", specifier = ">=3.16.0" },
{ name = "pyepics", specifier = ">=3.5.10" },
{ name = "typer", specifier = ">=0.23.2" },
]
@@ -21,7 +23,10 @@ requires-dist = [
dev = [
{ name = "pyright", specifier = ">=1.1.410" },
{ name = "pytest", specifier = ">=8.4.2" },
{ name = "pytest-env", specifier = ">=1.7.0" },
{ name = "pytest-mock", specifier = ">=3.15.1" },
{ name = "ruff", specifier = ">=0.15.19" },
{ name = "twine", specifier = ">=6.2.0" },
]
[[package]]
@@ -35,11 +40,14 @@ dependencies = [
{ name = "pyepics" },
{ name = "scikit-learn" },
{ name = "scipy" },
{ name = "sls2om" },
]
[package.dev-dependencies]
dev = [
{ name = "pytest" },
{ name = "pytest-env" },
{ name = "pytest-mock" },
{ name = "ruff" },
]
@@ -51,11 +59,14 @@ requires-dist = [
{ name = "pyepics", specifier = ">=3.5.8" },
{ name = "scikit-learn", specifier = ">=1.7.2" },
{ name = "scipy", specifier = ">=1.15.3" },
{ name = "sls2om", specifier = "==0.1.0", index = "https://gitea.psi.ch/api/packages/sls/pypi/simple/" },
]
[package.metadata.requires-dev]
dev = [
{ name = "pytest", specifier = ">=8.4.2" },
{ name = "pytest-env", specifier = ">=1.7.0" },
{ name = "pytest-mock", specifier = ">=3.15.1" },
{ name = "ruff", specifier = ">=0.15.20" },
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@@ -295,6 +306,32 @@ wheels = [
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[[package]]
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{ name = "python-dotenv" },
{ name = "tomli" },
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source = { registry = "https://pypi.org/simple" }
dependencies = [
{ name = "pytest" },
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sdist = { url = "https://files.pythonhosted.org/packages/68/14/eb014d26be205d38ad5ad20d9a80f7d201472e08167f0bb4361e251084a9/pytest_mock-3.15.1.tar.gz", hash = "sha256:1849a238f6f396da19762269de72cb1814ab44416fa73a8686deac10b0d87a0f", size = 34036, upload-time = "2025-09-16T16:37:27.081Z" }
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[[package]]
name = "python-dateutil"
version = "2.9.0.post0"
@@ -307,6 +344,15 @@ wheels = [
{ url = "https://files.pythonhosted.org/packages/ec/57/56b9bcc3c9c6a792fcbaf139543cee77261f3651ca9da0c93f5c1221264b/python_dateutil-2.9.0.post0-py2.py3-none-any.whl", hash = "sha256:a8b2bc7bffae282281c8140a97d3aa9c14da0b136dfe83f850eea9a5f7470427", size = 229892, upload-time = "2024-03-01T18:36:18.57Z" },
]
[[package]]
name = "python-dotenv"
version = "1.2.2"
source = { registry = "https://pypi.org/simple" }
sdist = { url = "https://files.pythonhosted.org/packages/82/ed/0301aeeac3e5353ef3d94b6ec08bbcabd04a72018415dcb29e588514bba8/python_dotenv-1.2.2.tar.gz", hash = "sha256:2c371a91fbd7ba082c2c1dc1f8bf89ca22564a087c2c287cd9b662adde799cf3", size = 50135, upload-time = "2026-03-01T16:00:26.196Z" }
wheels = [
{ url = "https://files.pythonhosted.org/packages/0b/d7/1959b9648791274998a9c3526f6d0ec8fd2233e4d4acce81bbae76b44b2a/python_dotenv-1.2.2-py3-none-any.whl", hash = "sha256:1d8214789a24de455a8b8bd8ae6fe3c6b69a5e3d64aa8a8e5d68e694bbcb285a", size = 22101, upload-time = "2026-03-01T16:00:25.09Z" },
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[[package]]
name = "pytz"
version = "2026.2"
@@ -411,6 +457,18 @@ wheels = [
{ url = "https://files.pythonhosted.org/packages/b7/ce/149a00dd41f10bc29e5921b496af8b574d8413afcd5e30dfa0ed46c2cc5e/six-1.17.0-py2.py3-none-any.whl", hash = "sha256:4721f391ed90541fddacab5acf947aa0d3dc7d27b2e1e8eda2be8970586c3274", size = 11050, upload-time = "2024-12-04T17:35:26.475Z" },
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[[package]]
name = "sls2om"
version = "0.1.0"
source = { registry = "https://gitea.psi.ch/api/packages/sls/pypi/simple/" }
dependencies = [
{ name = "numpy" },
]
sdist = { url = "https://gitea.psi.ch/api/packages/sls/pypi/files/sls2om/0.1.0/sls2om-0.1.0.tar.gz", hash = "sha256:4592902f2cdc0179412321d5133e883ef754f18dd3ff9ff4acd67802723d46c1" }
wheels = [
{ url = "https://gitea.psi.ch/api/packages/sls/pypi/files/sls2om/0.1.0/sls2om-0.1.0-py3-none-any.whl", hash = "sha256:075f3e8dce337c9ecb18ab0dc74ef850f4d0470d4b4cfcd918f328c552ce9c92" },
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[[package]]
name = "threadpoolctl"
version = "3.6.0"
services/tunebump/current/app/pyproject.toml
+13 -1
View File
@@ -5,6 +5,7 @@ description = "AGEBD-TUNEBUMP Service"
requires-python = "==3.10.*"
dependencies = [
"agebd",
"sls2om==0.1.0",
"pyepics>=3.5.8",
"numpy>=2.2.6",
"scipy>=1.15.3",
@@ -13,6 +14,8 @@ dependencies = [
[dependency-groups]
dev = [
"pytest>=8.4.2",
"pytest-env>=1.7.0",
"pytest-mock>=3.15.1",
"ruff>=0.15.20",
]
@@ -20,6 +23,7 @@ dev = [
# Path is relative to where agebd package is deployed on hla
# machines (see CI/CD in .gitea/workflows)
agebd = { path = "../../../../packages/agebd", editable = true }
sls2om = { index = "gitea-sls" }
[build-system]
requires = ["hatchling"]
@@ -28,6 +32,11 @@ build-backend = "hatchling.build"
[tool.uv]
package = true
[[tool.uv.index]]
# SLS Packages on Gitea
name = "gitea-sls"
url = "https://gitea.psi.ch/api/packages/sls/pypi/simple/"
[tool.pytest.ini_options]
pythonpath = ["src"]
env = [
@@ -46,4 +55,7 @@ line-length = 100
extend-select = ["I"]
[tool.ruff.lint.isort]
known-first-party = ["agebd"]
known-first-party = [
"agebd",
"sls2om",
]
services/tunebump/current/app/src/agebd_tunebump/service.py
+2 -6
View File
@@ -2,18 +2,14 @@ from datetime import datetime
import numpy as np
from epics import PV
# TODO: how to package/deploy this to use it here?
from OMFacility import Facility
# TODO: how to package/deploy this to use it here?
from OMSLS2Magnet import SLS2Magnet
from scipy import signal
from agebd.pv import get_pv_class
from agebd.service.base import BaseService
from agebd.service.pvs import BasePVs
from agebd.utils import printgetversion
from sls2om.OMFacility import Facility
from sls2om.OMSLS2Magnet import SLS2Magnet
__version__ = printgetversion(__file__)
services/tunebump/current/app/tests/test_app.py
+4 -1
View File
@@ -1,7 +1,10 @@
from agebd_tunebump import PVs, Service
def test_app():
def test_app(mocker):
mocker.patch("agebd_tunebump.service.Facility")
mocker.patch("agebd_tunebump.service.SLS2Magnet")
service_name = "DUMMY"
pvs = PVs(service_name=service_name)
service = Service(name=service_name, pvs=pvs)
services/tunebump/current/app/uv.lock
Generated
+58
View File
@@ -8,12 +8,14 @@ version = "0.1.0"
source = { editable = "../../../../packages/agebd" }
dependencies = [
{ name = "h5py" },
{ name = "pyepics" },
{ name = "typer" },
]
[package.metadata]
requires-dist = [
{ name = "h5py", specifier = ">=3.16.0" },
{ name = "pyepics", specifier = ">=3.5.10" },
{ name = "typer", specifier = ">=0.23.2" },
]
@@ -21,7 +23,10 @@ requires-dist = [
dev = [
{ name = "pyright", specifier = ">=1.1.410" },
{ name = "pytest", specifier = ">=8.4.2" },
{ name = "pytest-env", specifier = ">=1.7.0" },
{ name = "pytest-mock", specifier = ">=3.15.1" },
{ name = "ruff", specifier = ">=0.15.19" },
{ name = "twine", specifier = ">=6.2.0" },
]
[[package]]
@@ -33,11 +38,14 @@ dependencies = [
{ name = "numpy" },
{ name = "pyepics" },
{ name = "scipy" },
{ name = "sls2om" },
]
[package.dev-dependencies]
dev = [
{ name = "pytest" },
{ name = "pytest-env" },
{ name = "pytest-mock" },
{ name = "ruff" },
]
@@ -47,11 +55,14 @@ requires-dist = [
{ name = "numpy", specifier = ">=2.2.6" },
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