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updated so fine scan takes input of coarse scan and you don't need to close the eog window in the middle of the run

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Beale John Henry
2023-07-11 16:40:26 +02:00
parent 03e9e0e462
commit d58f148e3c
1 changed files with 8 additions and 7 deletions
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15
clen_tools/detector-distance-refinement.py
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@@ -394,10 +394,9 @@ def scrub_scan( scan_top_dir, scan ):
min_alpha_clen, min_beta_clen, min_gamma_clen, min_c_clen, min_alpha_val, min_beta_val, min_gamma_val, min_c_val = find_clen_values(stats_df)
# print suggested clen
if scan == "fine":
suggested_clen = (min_alpha_clen + min_beta_clen + min_gamma_clen )/3
suggested_clen = round(suggested_clen, 4)
print ("The suggested clen = {0}".format(suggested_clen))
suggested_clen = (min_alpha_clen + min_beta_clen + min_gamma_clen )/3
suggested_clen = round(suggested_clen, 4)
print ("The suggested clen = {0}".format(suggested_clen))
# plot results
fig, (ax1, ax3) = plt.subplots(1, 2)
@@ -409,7 +408,8 @@ def scrub_scan( scan_top_dir, scan ):
fig.tight_layout()
plt.savefig("{0}.png".format(scan))
plt.show()
return suggested_clen
def main( cwd, lst, sample, geom, centre_clen, cell_file ):
@@ -417,13 +417,14 @@ def main( cwd, lst, sample, geom, centre_clen, cell_file ):
scan( cwd, lst, sample, geom, centre_clen, cell_file, step_size="coarse" )
scrub_scan( top_dir_coarse, scan="coarse" )
suggested_clen = scrub_scan( top_dir_coarse, scan="coarse" )
top_dir_fine = "{0}/fine".format( cwd )
scan( cwd, lst, sample, geom, centre_clen, cell_file, step_size="fine" )
scan( cwd, lst, sample, geom, suggested_clen, cell_file, step_size="fine" )
scrub_scan( top_dir_fine, scan="fine" )
plt.show()
if __name__ == "__main__":
parser = argparse.ArgumentParser()