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1d88f33cf3
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Replace sf_ prefix with cbd_ for streak finder params; We are at SwissFell after all
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2025-07-11 15:29:51 +02:00 |
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193f531d5c
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Correct setting name for mask form file dataset; prepend all strak-finder-specific settings names with sf; Make streak-finder mask optional now that we have mask from file
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2025-07-11 14:57:20 +02:00 |
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4eb4bb76dc
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Ensure single read and no copy for hdf5 data
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2025-07-11 14:47:20 +02:00 |
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Dorofeeva Elizaveta (EXT)
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7169ce5acb
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We know that detected streaks are list, use np.array
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2025-07-11 11:22:45 +02:00 |
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Dorofeeva Elizaveta (EXT)
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e3e701a4da
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Masking negative values for streak finder should be reflected in mask, not in data
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2025-07-11 11:09:17 +02:00 |
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d8e38df39a
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Option to read additional mask from file; Applied on startup only
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2025-07-11 10:16:05 +02:00 |
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e756b70655
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Credits
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2025-07-11 08:57:24 +02:00 |
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2b17a8bd3a
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Configurable negative values handler for streak finder
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2025-07-11 08:53:18 +02:00 |
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b6df4986de
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Further simplify, get rid of redundant brackets
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2025-07-11 08:19:10 +02:00 |
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1ef801c37e
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Add parameter sf_min_hit_streaks to streak finder - Minimum number of discovered streaks to categorize frame as a hit
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2025-07-11 08:11:42 +02:00 |
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c5ba140c71
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Format import
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2025-07-11 08:08:22 +02:00 |
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152b2342d7
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Simplify results dictionary updates in streak finder
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2025-07-11 08:06:29 +02:00 |
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6f2fa2d419
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Merge branch 'chapman' of https://gitea.psi.ch/ext-dorofe_e/dap into chapman
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2025-07-11 07:59:27 +02:00 |
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094371a63b
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Simplify converting frame to stack for CrystData
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2025-07-11 07:59:19 +02:00 |
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626f324eff
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Merge branch 'main' into chapman
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2025-07-10 18:52:10 +02:00 |
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a304ff1d9d
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Added crop roi to readme
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2025-07-10 10:33:38 +02:00 |
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Dorofeeva Elizaveta (EXT)
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2bd3e875e3
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Bug fix in streaks coordintaes shift
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2025-07-10 10:26:38 +02:00 |
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b3ec993f2f
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Swap x/t for crop roi for cryst data
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2025-07-10 10:08:37 +02:00 |
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84b6ef3c52
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For concentric streaks detection, take into account crop region shift
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2025-07-10 10:07:19 +02:00 |
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ea28335ae0
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For final streak finder result, take into account crop region shift
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2025-07-10 09:33:36 +02:00 |
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Dorofeeva Elizaveta (EXT)
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969ac8ffcf
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First step towards running algorithm on cropped image
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2025-07-10 09:26:17 +02:00 |
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d9ef09a69e
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Clean up debug prints; minor cleanup in README
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2025-07-07 10:05:29 +02:00 |
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8e4301c443
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Update README with details of streak finder input and output parameters as well as example settings json
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2025-07-07 09:56:25 +02:00 |
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76b8d957dd
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Code cleanup; TODO: update README
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2025-07-07 09:28:41 +02:00 |
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00024ffd5d
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Merge branch 'chapman' of https://gitea.psi.ch/ext-dorofe_e/dap into chapman
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2025-07-07 09:03:20 +02:00 |
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c6d10b2fae
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Bugfixes, add mask rois to streak finder; Allows masking out bad rois or a part of sensor to speed up
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2025-07-07 09:00:57 +02:00 |
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Dorofeeva Elizaveta (EXT)
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ca6ef2453a
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Bug fix in streak finder; TODO: mask from file is not refreshed on file change
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2025-07-04 11:57:08 +02:00 |
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ff532af0d6
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Chane image in-place if snr selected; Use concentric mask
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2025-07-04 11:14:32 +02:00 |
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2e066ef3a7
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Have mask and whitefield also available as it was outside of streak finder
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2025-07-04 10:55:04 +02:00 |
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a87b84e6c2
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Correct order of calls in streakfind
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2025-07-04 08:56:45 +02:00 |
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6ff5e54be7
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Return early if no streaks detected
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2025-07-04 08:55:20 +02:00 |
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Dorofeeva Elizaveta (EXT)
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2852a5320a
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Bug fixes in new streak finder
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2025-07-04 08:43:28 +02:00 |
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6e695a6734
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New streak finder
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2025-07-03 15:22:34 +02:00 |
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fe23223887
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Update readme - streak finder now marks frames as hits
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2025-06-30 13:51:07 +02:00 |
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Dorofeeva Elizaveta (EXT)
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3e9da9aae5
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Bug fix in streak finder; Mark frames with streaks as a hit
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2025-06-30 13:47:44 +02:00 |
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0962f48349
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More parameters returned by streak finder: lengths and Bragg counts of all identified streaks
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2025-06-30 13:26:24 +02:00 |
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8f66420538
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Updated README - update json settings file example
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2025-06-30 09:13:52 +02:00 |
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Dorofeeva Elizaveta (EXT)
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3c48072d84
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Pixel mask that is read from file is converted to bool
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2025-06-25 15:32:55 +02:00 |
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a69498ce7e
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Correct parameter name in README for mask from file
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2025-06-25 11:30:33 +02:00 |
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84486c6ff9
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Allow to apply additional mask that is read out of file - NumPy or hdf5
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2025-06-25 11:15:43 +02:00 |
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a10c70028f
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For white field correction, allow to specify dataset to read white field from
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2025-06-25 11:05:21 +02:00 |
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cca5decacc
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Add whitefield correction error handling
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2025-06-25 10:21:56 +02:00 |
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02e15090cd
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Add example parameters for streak finder and whitefield correction to README
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2025-06-25 09:22:14 +02:00 |
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12104e72ef
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CBD streak finder: Correct shape of streaks data
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2025-06-25 08:53:25 +02:00 |
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Dorofeeva Elizaveta (EXT)
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68b108655b
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Ensure wf correctrion to be in-place
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2025-06-24 10:09:04 +02:00 |
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cb2c6d5ab2
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Added streak finding and white field correction for convergent-beam diffraction experiments;
TODO: cleanup, document streakfinder installation or add to setup
|
2025-06-24 08:13:28 +02:00 |
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