Update README.md
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README.md
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README.md
@ -111,13 +111,13 @@ this file contains indexing parameters used by crystfel.
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>
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> lyso.cell hewl.cell
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**HINT** - in case there are several space group at which protein can be indexed, it's possible to run automatically indexing in the *alternative* space group. To do this - provide an alternative space group settings in the file <cell_name>.cell_alternative. Example:
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**HINT** - in case there are several space group at which protein can be indexed, it's possible to run automatically indexing in the *alternative* space group. To do this - provide an alternative space group settings in the file <cell_name>.cell_alternative. Example:
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> $ ls res/ap/CELL
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>
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> lyso.cell chim.cell chim.cell_alternative
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> $ ls res/ap/CELL
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>
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> lyso.cell chim.cell chim.cell_alternative
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runs with the <cell_name>=lyso will be indexed using lyso.cell file, while for the <cell_name>=chim - indexing will be done twice, using chim.cell and chim.cell_alternative files (and results of both indexing will be filled in logbook)
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runs with the <cell_name>=lyso will be indexed using lyso.cell file, while for the <cell_name>=chim - indexing will be done twice, using chim.cell and chim.cell_alternative files (and results of both indexing will be filled in logbook)
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* create (an empty) google spreadsheet
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@ -153,6 +153,9 @@ this file contains indexing parameters used by crystfel.
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* compression: True
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* factor: Value (0.25 to round to 250eV or photon beam energy to make output in photon counts)
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Important:
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* geometry: False (that's the usual choice, module-to-module adjustment is made then with crystfel geometry file. Choice of the value should be aligned with the geometry file used)
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* login to swissfel online computing infrastructure with your personal PSI account:
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> $ ssh psi_account@sf-l-001
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