This commit is contained in:
@@ -1,12 +1,12 @@
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#Tue Feb 11 17:02:23 CET 2020
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#Wed Feb 12 00:37:11 CET 2020
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HARMONIC_ID_1=1
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ALPHA_ID_2=0.0
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ENERGY=708.5
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ENERGY=710.8
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ALPHA_ID_1=0.0
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POL_ID_2=Circ_Minus
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POL_ID_1=Circ_Plus
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POL_ID_2=Lin_Hor
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POL_ID_1=Lin_Hor
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OFFSET_ID_1=-2.5
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NORM_FILE=/sls/X11MA/data/X11MA/Data1/public/PEEM/2020_02/20200206/Take_Image_402/0/i402_1_0.tif
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ID=ID1_ID2
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ID=ID2
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OFFSET_ID_2=-2.5
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HARMONIC_ID_2=1
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@@ -1,2 +1,2 @@
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#Tue Feb 11 17:26:16 CET 2020
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FileSequentialNumber=577
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#Wed Feb 12 15:36:01 CET 2020
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FileSequentialNumber=628
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@@ -1,4 +1,4 @@
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#Mon Feb 10 22:27:33 CET 2020
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#Wed Feb 12 11:25:27 CET 2020
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spatialCalOffsetY=NaN
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spatialCalOffsetX=NaN
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colormapLogarithmic=false
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@@ -6,7 +6,7 @@ scale=1.0
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grayscale=false
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spatialCalScaleX=NaN
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spatialCalScaleY=NaN
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colormapMax=1.5
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colormapMax=0.5
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rescaleOffset=0.0
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roiWidth=-1
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colormap=Grayscale
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+20
-5
@@ -141,12 +141,16 @@ def remove_outliers(imgdata, threshold = 1e9, replace_value=None):
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return data
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"""
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def _save_as_tiff(data, filename, check=False, show = False):
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def _save_as_tiff(data, filename, check=False, show = False, metadata={}):
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if type(data) == Data:
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ip = load_array(data.matrix)
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else:
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ip = data
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info = "Timestamp: " + time.strftime("%y/%m/%d %H:%M:%S",time.localtime())
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for key,val in metadata.items():
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info = info + "\n" + str(key) + ": " + str(val)
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ip.setProperty("Info", info)
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data = get_ip_array(ip)
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if not os.path.exists(os.path.dirname(filename)):
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os.makedirs(os.path.dirname(filename))
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@@ -159,12 +163,11 @@ def _save_as_tiff(data, filename, check=False, show = False):
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print (" ------> Error reading array: " + str(filename))
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def save_as_tiff(data, filename, check=False, show = False, parallel=True):
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def save_as_tiff(data, filename, check=False, show = False, parallel=True, metadata={}):
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if parallel:
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return fork((_save_as_tiff,(data, filename, check, show)),)
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return fork((_save_as_tiff,(data, filename, check, show, metadata)),)
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else:
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_save_as_tiff(data, filename, check, show)
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_save_as_tiff(data, filename, check, show, metadata)
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def trigger_eiger(wait=False):
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eiger.start()
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@@ -172,6 +175,18 @@ def trigger_eiger(wait=False):
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eiger.waitNewImage(20000)
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def set_exposure_time(exposure):
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if exposure == eiger.getExposure():
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return
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started = eiger.isStarted()
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if started:
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eiger.stop()
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time.sleep(0.2)
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eiger.setExposure(exposure)
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if started:
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if eiger.grabMode==eiger.GrabMode.Continuous:
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eiger.start()
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if False:
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integrate_roi(image, 10, 5, 20, 10)
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@@ -33,7 +33,7 @@ if METHOD == "Two_Energies":
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start = time.time()
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threads = []
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path = "{data}/{year}_{month}/{date}" + "/" + "{seq}%03d_" + METHOD
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set_exec_pars(path= path, format="txt", layout="table", open=True)
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data_path = get_context().setup.expandPath(path)
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@@ -165,6 +165,8 @@ def save_image_file(frame, cycle=-1, frame_index=0):
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# log("SV:"+Format(startvoltage,"0.000")+" OB:"+Format(objective,"0.00")+" ST:"+Format(LEEMtemp,"0.0"))
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eiger.stop()
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eiger.grabMode=eiger.GrabMode.Single
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time.sleep(0.3)
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try:
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#Do the measurement loop
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@@ -182,7 +184,7 @@ try:
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for i in range(2):
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if (cycle == 1) or (METHOD != "Take_Image"):
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assert_status_ok()
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assert_status_ok()
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set_exposure_time(EXPOSURE[i])
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print "--- Grabing " + str(AVERAGE[i])+ " frames - cycle: " + str(cycle) + " step: " + str(i)
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ret = grab_frames(image, AVERAGE[i], roi=None, wait_next=True)
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@@ -19,9 +19,10 @@ start = time.time()
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eiger.stop()
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eiger.grabMode=eiger.GrabMode.Single
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eiger.setExposure(EXPOSURE)
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time.sleep(0.3)
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set_exposure_time(EXPOSURE)
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set_exec_pars(path="{data}/{year}_{month}/{date}/AbsortionSpectrum_{seq}%03d", format="csv", layout="table")
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set_exec_pars(path="{data}/{year}_{month}/{date}/{seq}%03d_AbsortionSpectrum", format="csv", layout="table")
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tag= "AbsortionSpectrum_{seq}%03d"
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rois = create_roi_devices(ROI)
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@@ -0,0 +1,52 @@
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EXPOSURE=1.0
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"""
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while True:
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eiger.stop()
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eiger.grabMode=eiger.GrabMode.Single
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time.sleep(1.2)
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print "-------------"
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for i in range(10):
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eiger.stop()
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time.sleep(0.2)
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eiger.setExposure(EXPOSURE)
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eiger.start()
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image.waitNext(20000)
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rb=caget("X11MA-ES1-SD1:cam1:AcquireTime_RBV",'d')
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if abs(rb - EXPOSURE) >0.0001:
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raise Exception("Error: " + str(EXPOSURE) + " - " + str(rb))
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print EXPOSURE
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EXPOSURE=EXPOSURE+0.1
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#time.sleep(2.0)
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eiger.grabMode=eiger.GrabMode.Continuous
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eiger.start()
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time.sleep(0.25)
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"""
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while True:
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eiger.stop()
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eiger.grabMode=eiger.GrabMode.Single
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#time.sleep(0.2)
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print "-------------"
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for i in range(10):
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set_exposure_time(EXPOSURE)
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eiger.start()
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image.waitNext(20000)
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rb=caget("X11MA-ES1-SD1:cam1:AcquireTime_RBV",'d')
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if abs(rb - EXPOSURE) >0.0001:
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raise Exception("Error: " + str(EXPOSURE) + " - " + str(rb))
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print EXPOSURE
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EXPOSURE=EXPOSURE+0.1
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#time.sleep(2.0)
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eiger.grabMode=eiger.GrabMode.Continuous
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eiger.start()
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time.sleep(0.25)
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