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Fix grab_frame

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This commit is contained in:
gac-x11ma
2021-12-14 14:25:13 +01:00
parent 69915afdb6
commit 065e33ad05
76 changed files with 5774 additions and 1156 deletions
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config/AbsortionSpectrum/C K edge-NCM.abs
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config/AbsortionSpectrum/Cl L edge-NCM.abs
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config/AbsortionSpectrum/Co L edge-NCM.abs
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config/AbsortionSpectrum/Cr L edge NCM.abs
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config/AbsortionSpectrum/Cu_L32_fine.abs
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config/AbsortionSpectrum/Mn L edge-NCM.abs
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config/AbsortionSpectrum/Mn_L3_L2fine.abs
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config/AbsortionSpectrum/Mn_L3_L2fine2.abs
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config/AbsortionSpectrum/Mn_L3_L2medium.abs
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config/AbsortionSpectrum/Ni L edge-NCM.abs
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config/AbsortionSpectrum/O K edge-NCM.abs
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config/AbsortionSpectrum/O_Sara.abs
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config/AbsortionSpectrum/P-S L edge-NCM broad.abs
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config/AbsortionSpectrum/P-S L edge-NCM.abs
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config/AbsortionSpectrum/Ti_L23_edge_fine.abs
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config/AbsortionSpectrum/Ti_L3_Arik.abs
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config/AbsortionSpectrum/Ti_Sara.abs
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config/ROIs/saraROI.roi
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config/ROIs/test.roi
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config/config.properties
+24 -19
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@@ -1,39 +1,23 @@
#Fri Mar 05 11:56:08 CET 2021
imageSourcesFile={config}/imaging.properties
#Wed Oct 27 10:03:30 CEST 2021
autoSaveScanData=true
simulation=false
commandExecutionEvents=true
logDaysToLive=7
dataScanSaveOutput=false
userAuthenticator=
logLevelConsole=Off
scanStreamerPort=-1
dataScanSaveScript=false
dataScanSaveSetpoints=false
notifiedTasks=EigerAbsSpec|Eiger2Img
parallelInitialization=true
dataTransferPath=~/Data1
scanStreamingPort=-1
saveConsoleSessionFiles=false
devicePoolFile={config}/devices.properties
versionTrackingManual=true
dataTransferMode=Off
hostName=null
userManagement=true
instanceName=SIM
disableEmbeddedAttributes=false
dataServerPort=-1
hideServerMessages=false
serverPort=8080
versionTrackingEnabled=true
dataPath={data}/{year}_{month}/{date}/{date}_{seq}%04d_{name}
serverEnabled=false
dataScanReleaseRecords=false
depthDimension=0
dataScanPreserveTypes=false
logLevel=Info
dataScanFlushRecords=true
logPath={logs}/{date}_{time}
dataLayout=table
disableDataFileLogs=false
sessionHandling=On
@@ -41,10 +25,31 @@ deviceUpdateStrategyFile={config}/update.properties
terminalEnabled=false
notificationLevel=Completion
terminalPort=3579
tasksFile={config}/tasks.properties
dataTransferUser=
createSessionFiles=false
versionTrackingLogin={context}/svcusr-hlapp_robot
noBytecodeFiles=false
versionTrackingRemote=git@git.psi.ch\:pshell_config/x11ma.git
imageSourcesFile={config}/imaging.properties
commandExecutionEvents=true
logDaysToLive=7
logLevelConsole=Off
filePermissionsConfig=Public
scanStreamerPort=-1
dataScanSaveSetpoints=false
versionTrackingManual=true
dataTransferMode=Off
userManagement=true
instanceName=SIM
dataServerPort=-1
hideServerMessages=false
dataScanReleaseRecords=false
dataScanPreserveTypes=false
dataScanFlushRecords=true
logPath={logs}/{date}_{time}
filePermissionsLogs=Public
filePermissionsScripts=Public
tasksFile={config}/tasks.properties
filePermissionsData=Default
createSessionFiles=false
dataProvider=txt
saveCommandStatistics=false
config/devices.properties
Executable → Regular
+5 -7
View File
@@ -1,6 +1,5 @@
#fe_slit_V_ctr:offset=ch.psi.pshell.epics.ChannelDouble||||
eiger=ch.psi.pshell.epics.AreaDetector|X11MA-ES1-SD1|||true
fe_slit_V_ctr=ch.psi.pshell.epics.Motor|X11MA-FE-SV:center|||true
#fe_slit_H_ctr_offset=ch.psi.pshell.epics.ChannelDouble||||
fe_slit_H_ctr=ch.psi.pshell.epics.Motor|X11MA-FE-SH:center|||true
fe_slit_V_size_offs=ch.psi.pshell.epics.ChannelDouble|X11MA-FE-DSVER.A|||true
fe_slit_V_size=ch.psi.pshell.epics.Motor|X11MA-FE-SV:size|||true
@@ -69,7 +68,6 @@ keithley_1a=ch.psi.pshell.epics.ChannelDouble|X11MA-ES1:CADC1|Read||true
keithley_2a=ch.psi.pshell.epics.ChannelDouble|X11MA-ES1:CADC2|Read||true
keithley_3a=ch.psi.pshell.epics.ChannelDouble|X11MA-ES1:CADC3|Read||true
otf_start=ch.psi.pshell.epics.ChannelInteger|X11MA-OTF:GO|||true
eiger=ch.psi.pshell.epics.AreaDetector|X11MA-ES1-SD1|||true
eiger_bit_depth_rbv=ch.psi.pshell.epics.ChannelInteger|X11MA-ES1-SD1:cam1:BitDepth_RBV|Read||true
eiger_mode_rbv=ch.psi.pshell.epics.ChannelString|X11MA-ES1-SD1:cam1:ImageMode_RBV|Read||true
eiger_exposure_rbv=ch.psi.pshell.epics.ChannelDouble|X11MA-ES1-SD1:cam1:AcquireTime_RBV 2|Read||true
@@ -78,15 +76,15 @@ eiger_bit_depth=ch.psi.pshell.epics.ChannelInteger|X11MA-ES1-SD1:cam1:BitDepth||
eiger_mode=ch.psi.pshell.epics.ChannelInteger|X11MA-ES1-SD1:cam1:ImageMode|||true
eiger_exposure=ch.psi.pshell.epics.ChannelDouble|X11MA-ES1-SD1:cam1:AcquireTime 2|||true
Ecrbk=ch.psi.pshell.epics.ChannelDouble|X11MA-PGM:CERBK|Read||true
#CADC1=ch.psi.pshell.epics.ChannelDouble|X11MA-ES1:CADC1|Read||true
#CADC2=ch.psi.pshell.epics.ChannelDouble|X11MA-ES1:CADC2|Read||true
#CADC3=ch.psi.pshell.epics.ChannelDouble|X11MA-ES1:CADC3|Read||true
CADC1=ch.psi.pshell.epics.ChannelDouble|X11MA-ES1:CADC1|Read||true
CADC2=ch.psi.pshell.epics.ChannelDouble|X11MA-ES1:CADC2|Read||true
CADC3=ch.psi.pshell.epics.ChannelDouble|X11MA-ES1:CADC3|Read||true
#CADC4=ch.psi.pshell.epics.ChannelDouble|X11MA-ES1:CADC4|Read||true
#CADC5=ch.psi.pshell.epics.ChannelDouble|X11MA-ES1:CADC5|Read||true
#CADC6=ch.psi.pshell.epics.ChannelDouble|X11MA-ES1:CADC6|Read||true
#CADC7=ch.psi.pshell.epics.ChannelDouble|X11MA-ES1:CADC7|Read||true
girder_x=ch.psi.pshell.epics.Positioner|X11MA-HG:X_SET X11MA-HG:X1|||true
cam2=ch.psi.pshell.epics.AreaDetector|X11MA-ES1-CAM2|||true
image=ch.psi.pshell.imaging.CameraSource|eiger|||true
raw=ch.psi.pshell.imaging.CameraSource|eiger|||true
image2=ch.psi.pshell.imaging.CameraSource|cam2|||true
axis=ch.psi.pshell.imaging.MjpegSource|http://axis-x11ma.psi.ch/axis-cgi/mjpg/video.cgi?id=176 true||-200|false
config/plugins.properties
+7
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@@ -1,3 +1,10 @@
Align_ComputeShifts.java=disabled
Imaging.java=disabled
Initialization.java=disabled
TestLuka.java=disabled
Align_TranslationFilter.java=disabled
ShiftsIO.java=disabled
Align_ComplexEdgeFiltering.java=disabled
OTFScanBase.java=enabled
EnergyScanBase.java=enabled
DelayScanBase.java=enabled
config/session_metadata.properties
+3 -3
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@@ -1,5 +1,5 @@
#Thu Sep 02 13:21:00 CEST 2021
#Sat Dec 04 14:45:18 CET 2021
keywords=List;[]
ownerEmail=String;jinghui.luo@psi.ch
ownerEmail=String;arik.beck@psi.ch
contactEmail=String;armin.kleibert@psi.ch
owner=String;Jinghui Luo
owner=String;Federico Stramaglia
config/sessions.properties
+2 -2
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@@ -1,2 +1,2 @@
#Fri Sep 03 09:21:14 CEST 2021
SessionCounter=38
#Mon Nov 29 10:07:24 CET 2021
SessionCounter=54
config/settings.properties
Executable → Regular
+6 -6
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@@ -1,18 +1,18 @@
#Thu Sep 09 14:50:51 CEST 2021
#Tue Dec 14 13:48:54 CET 2021
HARMONIC_ID_1=1
RSYNC_USER=
OUTLIERS_THRESHOLD=1000000000
NORM_FILE=/sls/X11MA/data/X11MA/Data1/2021/Yona250121/s250121
NORM_FILE=/sls/X11MA/data/e19357/Data1/2021_10
AUTO_SWITCH_VALVE=true
DRY_RUN=false
POL_ID_2=Lin_Hor
OFFSET_ID_1=0.0
OFFSET_ID_1=-5.0
ID=ID2
OFFSET_ID_2=0.0
OFFSET_ID_2=-2.1
proposal=proposal
ENERGY=706.3
ENERGY=800.0
proposer=proposer
POL_ID_1=Circ_Plus
POL_ID_1=Lin_Hor
RSYNC_HOST=
sample=sample
RSYNC_PATH=
config/variables.properties
Executable → Regular
+4 -4
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@@ -1,4 +1,4 @@
#Mon Sep 13 13:08:47 CEST 2021
LastRunDate=210913
FileSequentialNumber=9757
DaySequentialNumber=34
#Sat Dec 11 05:45:56 CET 2021
LastRunDate=211211
FileSequentialNumber=11873
DaySequentialNumber=66
devices/girder_x.properties
Executable → Regular
+2 -2
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@@ -1,10 +1,10 @@
#Wed May 05 15:14:33 CEST 2021
#Tue Nov 02 11:19:09 CET 2021
offset=0.0
maxValue=3.0
rotation=false
precision=3
scale=1.0
resolution=0.005
minValue=2.0
minValue=-2.0
unit=mm
sign_bit=0
devices/image.properties
+4 -4
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@@ -1,4 +1,4 @@
#Mon Sep 13 13:04:13 CEST 2021
#Mon Oct 25 14:11:15 CEST 2021
spatialCalOffsetY=NaN
spatialCalOffsetX=NaN
colormapLogarithmic=false
@@ -6,12 +6,12 @@ scale=1.0
grayscale=false
spatialCalScaleX=NaN
spatialCalScaleY=NaN
colormapMax=7000.0
colormapMax=2000.0
rescaleOffset=0.0
roiWidth=-1
colormap=Grayscale
invert=false
colormapMin=2000.0
colormapMin=0.0
rotationCrop=false
rotation=0.0
rescaleFactor=1.0
@@ -19,7 +19,7 @@ spatialCalUnits=null
flipVertically=false
roiHeight=-1
flipHorizontally=false
colormapAutomatic=false
colormapAutomatic=true
roiY=0
roiX=0
transpose=false
devices/raw.properties
+25
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@@ -0,0 +1,25 @@
#Fri Nov 26 15:39:45 CET 2021
spatialCalOffsetY=NaN
spatialCalOffsetX=NaN
colormapLogarithmic=false
scale=1.0
grayscale=false
spatialCalScaleX=NaN
spatialCalScaleY=NaN
colormapMax=NaN
rescaleOffset=0.0
roiWidth=-1
colormap=Grayscale
invert=false
colormapMin=NaN
rotation=0.0
rotationCrop=false
rescaleFactor=1.0
spatialCalUnits=mm
flipVertically=false
roiHeight=-1
flipHorizontally=false
colormapAutomatic=true
roiY=0
roiX=0
transpose=false
devices/tst.tiff.properties
+20
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@@ -0,0 +1,20 @@
#Wed Oct 27 15:54:42 CEST 2021
spatialCalOffsetY=NaN
invert=false
spatialCalOffsetX=NaN
rotation=0.0
rotationCrop=false
scale=1.0
rescaleFactor=1.0
grayscale=false
spatialCalUnits=mm
flipVertically=false
roiHeight=-1
spatialCalScaleX=NaN
spatialCalScaleY=NaN
flipHorizontally=false
roiY=0
roiX=0
rescaleOffset=0.0
transpose=false
roiWidth=-1
plugins/DataAcquisition.form
+37 -11
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@@ -330,16 +330,23 @@
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" attributes="0">
<EmptySpace min="-2" pref="17" max="-2" attributes="0"/>
<Component id="rendererRoi" pref="427" max="32767" attributes="0"/>
<Component id="rendererRoi" pref="439" max="32767" attributes="0"/>
<EmptySpace type="separate" max="-2" attributes="0"/>
<Group type="103" groupAlignment="0" max="-2" attributes="0">
<Component id="jScrollPane1" alignment="0" pref="200" max="32767" attributes="0"/>
<Component id="buttonRoiRemove" alignment="0" pref="200" max="32767" attributes="0"/>
<Component id="buttonRoiAdd" alignment="0" pref="200" max="32767" attributes="0"/>
<Component id="jLabel26" min="-2" max="-2" attributes="0"/>
<Component id="buttonRoiClear" alignment="0" max="32767" attributes="0"/>
<Component id="buttonRoiOpen" alignment="0" max="32767" attributes="0"/>
<Component id="buttonRoiSave" alignment="0" max="32767" attributes="0"/>
<Group type="103" groupAlignment="0" attributes="0">
<Group type="103" groupAlignment="0" max="-2" attributes="0">
<Component id="jScrollPane1" alignment="0" pref="200" max="32767" attributes="0"/>
<Component id="buttonRoiRemove" alignment="0" pref="200" max="32767" attributes="0"/>
<Component id="buttonRoiAdd" alignment="0" pref="200" max="32767" attributes="0"/>
<Component id="jLabel26" min="-2" max="-2" attributes="0"/>
<Component id="buttonRoiClear" alignment="0" max="32767" attributes="0"/>
<Component id="buttonRoiOpen" alignment="0" max="32767" attributes="0"/>
<Component id="buttonRoiSave" alignment="0" max="32767" attributes="0"/>
</Group>
<Group type="102" attributes="0">
<Component id="jLabel7" min="-2" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Component id="textFOV" min="-2" pref="158" max="-2" attributes="0"/>
</Group>
</Group>
<EmptySpace min="-2" pref="13" max="-2" attributes="0"/>
</Group>
@@ -355,10 +362,15 @@
<Component id="buttonRoiAdd" min="-2" pref="25" max="-2" attributes="0"/>
<EmptySpace min="-2" max="-2" attributes="0"/>
<Component id="buttonRoiRemove" min="-2" pref="25" max="-2" attributes="0"/>
<EmptySpace type="separate" min="-2" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Group type="103" groupAlignment="3" attributes="0">
<Component id="jLabel7" alignment="3" min="-2" max="-2" attributes="0"/>
<Component id="textFOV" alignment="3" min="-2" max="-2" attributes="0"/>
</Group>
<EmptySpace max="-2" attributes="0"/>
<Component id="jLabel26" min="-2" max="-2" attributes="0"/>
<EmptySpace min="-2" max="-2" attributes="0"/>
<Component id="jScrollPane1" pref="175" max="32767" attributes="0"/>
<Component id="jScrollPane1" pref="227" max="32767" attributes="0"/>
<EmptySpace type="separate" min="-2" max="-2" attributes="0"/>
<Component id="buttonRoiClear" min="-2" pref="25" max="-2" attributes="0"/>
<EmptySpace min="-2" max="-2" attributes="0"/>
@@ -485,6 +497,20 @@
<EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="buttonRoiOpenActionPerformed"/>
</Events>
</Component>
<Component class="javax.swing.JTextField" name="textFOV">
<Properties>
<Property name="horizontalAlignment" type="int" value="0"/>
<Property name="disabledTextColor" type="java.awt.Color" editor="org.netbeans.beaninfo.editors.ColorEditor">
<Color blue="0" green="0" red="0" type="rgb"/>
</Property>
<Property name="enabled" type="boolean" value="false"/>
</Properties>
</Component>
<Component class="javax.swing.JLabel" name="jLabel7">
<Properties>
<Property name="text" type="java.lang.String" value="FOV:"/>
</Properties>
</Component>
</SubComponents>
</Container>
<Container class="javax.swing.JPanel" name="jPanel2">
plugins/DataAcquisition.java
+51 -13
View File
@@ -27,6 +27,8 @@ import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.logging.Level;
import java.util.logging.Logger;
import javax.script.ScriptException;
import javax.swing.JButton;
import javax.swing.JComboBox;
import javax.swing.JDialog;
@@ -34,6 +36,7 @@ import javax.swing.JFileChooser;
import javax.swing.JPanel;
import javax.swing.JSpinner;
import javax.swing.JToggleButton;
import javax.swing.SwingUtilities;
import javax.swing.event.TableModelEvent;
import javax.swing.event.TableModelListener;
import javax.swing.filechooser.FileNameExtensionFilter;
@@ -165,6 +168,22 @@ public class DataAcquisition extends Panel {
public void onExecutedFile(String fileName, Object result) {
}
@Override
protected void onShow() {
super.onShow();
new Thread(()->{
String fov="";
try {
fov = String.valueOf(eval("microscope.get_preset_label()", true));
} catch (Exception ex) {
}
String label =fov;
SwingUtilities.invokeLater(()->{
textFOV.setText(label);
});
}).start();
}
//Callback to perform update - in event thread
@Override
protected void doUpdate() {
@@ -261,8 +280,8 @@ public class DataAcquisition extends Panel {
model.setValueAt(rois.get(i).getWidth(), i, 3);
model.setValueAt(rois.get(i).getHeight(), i, 4);
}
Map<String, List<Integer>> roi_dict = getRois();
setGlobalVar("DAQ_PANEL_ROIS", roi_dict);
Map<String, List<Integer>> roi_dict = getRois();
setGlobalVar("DAQ_PANEL_ROIS", roi_dict);
}
void addRoi(Rect roi) {
@@ -493,6 +512,8 @@ public class DataAcquisition extends Panel {
buttonRoiClear = new javax.swing.JButton();
buttonRoiSave = new javax.swing.JButton();
buttonRoiOpen = new javax.swing.JButton();
textFOV = new javax.swing.JTextField();
jLabel7 = new javax.swing.JLabel();
jPanel2 = new javax.swing.JPanel();
buttonImgStart = new javax.swing.JButton();
buttonImgAbort = new javax.swing.JButton();
@@ -860,22 +881,33 @@ public class DataAcquisition extends Panel {
}
});
textFOV.setHorizontalAlignment(javax.swing.JTextField.CENTER);
textFOV.setDisabledTextColor(new java.awt.Color(0, 0, 0));
textFOV.setEnabled(false);
jLabel7.setText("FOV:");
javax.swing.GroupLayout panelRoiLayout = new javax.swing.GroupLayout(panelRoi);
panelRoi.setLayout(panelRoiLayout);
panelRoiLayout.setHorizontalGroup(
panelRoiLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(panelRoiLayout.createSequentialGroup()
.addGap(17, 17, 17)
.addComponent(rendererRoi, javax.swing.GroupLayout.DEFAULT_SIZE, 427, Short.MAX_VALUE)
.addComponent(rendererRoi, javax.swing.GroupLayout.DEFAULT_SIZE, 439, Short.MAX_VALUE)
.addGap(18, 18, 18)
.addGroup(panelRoiLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING, false)
.addComponent(jScrollPane1, javax.swing.GroupLayout.DEFAULT_SIZE, 200, Short.MAX_VALUE)
.addComponent(buttonRoiRemove, javax.swing.GroupLayout.DEFAULT_SIZE, 200, Short.MAX_VALUE)
.addComponent(buttonRoiAdd, javax.swing.GroupLayout.DEFAULT_SIZE, 200, Short.MAX_VALUE)
.addComponent(jLabel26)
.addComponent(buttonRoiClear, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.addComponent(buttonRoiOpen, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.addComponent(buttonRoiSave, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
.addGroup(panelRoiLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(panelRoiLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING, false)
.addComponent(jScrollPane1, javax.swing.GroupLayout.DEFAULT_SIZE, 200, Short.MAX_VALUE)
.addComponent(buttonRoiRemove, javax.swing.GroupLayout.DEFAULT_SIZE, 200, Short.MAX_VALUE)
.addComponent(buttonRoiAdd, javax.swing.GroupLayout.DEFAULT_SIZE, 200, Short.MAX_VALUE)
.addComponent(jLabel26)
.addComponent(buttonRoiClear, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.addComponent(buttonRoiOpen, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.addComponent(buttonRoiSave, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
.addGroup(panelRoiLayout.createSequentialGroup()
.addComponent(jLabel7)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(textFOV, javax.swing.GroupLayout.PREFERRED_SIZE, 158, javax.swing.GroupLayout.PREFERRED_SIZE)))
.addGap(13, 13, 13))
);
panelRoiLayout.setVerticalGroup(
@@ -888,10 +920,14 @@ public class DataAcquisition extends Panel {
.addComponent(buttonRoiAdd, javax.swing.GroupLayout.PREFERRED_SIZE, 25, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(buttonRoiRemove, javax.swing.GroupLayout.PREFERRED_SIZE, 25, javax.swing.GroupLayout.PREFERRED_SIZE)
.addGap(18, 18, 18)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addGroup(panelRoiLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
.addComponent(jLabel7)
.addComponent(textFOV, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(jLabel26)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(jScrollPane1, javax.swing.GroupLayout.DEFAULT_SIZE, 175, Short.MAX_VALUE)
.addComponent(jScrollPane1, javax.swing.GroupLayout.DEFAULT_SIZE, 227, Short.MAX_VALUE)
.addGap(18, 18, 18)
.addComponent(buttonRoiClear, javax.swing.GroupLayout.PREFERRED_SIZE, 25, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
@@ -2036,6 +2072,7 @@ public class DataAcquisition extends Panel {
private javax.swing.JLabel jLabel31;
private javax.swing.JLabel jLabel4;
private javax.swing.JLabel jLabel5;
private javax.swing.JLabel jLabel7;
private javax.swing.JLabel jLabel9;
private javax.swing.JPanel jPanel1;
private javax.swing.JPanel jPanel2;
@@ -2099,6 +2136,7 @@ public class DataAcquisition extends Panel {
private javax.swing.JTable tableRegions;
private javax.swing.JTable tableRoi;
private javax.swing.JButton textClearOutliersMask;
private javax.swing.JTextField textFOV;
private javax.swing.JTextField textNorm;
private javax.swing.JTextField textOutliersMask;
private javax.swing.JButton textSelectOutliersMask;
plugins/Eiger.form
+62 -36
View File
@@ -20,29 +20,46 @@
<EmptySpace max="-2" attributes="0"/>
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" attributes="0">
<Group type="103" groupAlignment="0" attributes="0">
<Component id="jLabel1" alignment="0" min="-2" max="-2" attributes="0"/>
<Component id="jLabel2" alignment="0" min="-2" max="-2" attributes="0"/>
<Component id="jLabel3" min="-2" max="-2" attributes="0"/>
</Group>
<Component id="renderer" max="32767" attributes="0"/>
<EmptySpace min="-2" max="-2" attributes="0"/>
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" alignment="0" attributes="0">
<EmptySpace min="-2" pref="224" max="-2" attributes="0"/>
<Component id="buttonDone" min="-2" pref="127" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Component id="buttonCloseVG10" min="-2" pref="127" max="-2" attributes="0"/>
</Group>
<Group type="102" alignment="0" attributes="0">
<Component id="spinnerExposure" linkSize="1" min="-2" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Component id="deviceValuePanel3" linkSize="1" min="-2" pref="106" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Component id="deviceValuePanel4" min="-2" pref="127" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Component id="buttonShowDetectorPanel" min="-2" pref="127" max="-2" attributes="0"/>
<Component id="checkMeasurements" min="-2" max="-2" attributes="0"/>
<Component id="comboScale" alignment="0" min="-2" pref="104" max="-2" attributes="0"/>
<Component id="jLabel4" min="-2" max="-2" attributes="0"/>
<Component id="jLabel6" alignment="0" min="-2" max="-2" attributes="0"/>
<Component id="jLabel5" min="-2" max="-2" attributes="0"/>
<Group type="103" alignment="0" groupAlignment="1" max="-2" attributes="0">
<Component id="spinnerMax" alignment="0" max="32767" attributes="0"/>
<Component id="spinnerMin" alignment="0" pref="72" max="32767" attributes="0"/>
</Group>
</Group>
<EmptySpace max="32767" attributes="0"/>
</Group>
<Group type="102" attributes="0">
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" attributes="0">
<Group type="103" groupAlignment="0" attributes="0">
<Component id="jLabel1" alignment="0" min="-2" max="-2" attributes="0"/>
<Component id="jLabel2" alignment="0" min="-2" max="-2" attributes="0"/>
<Component id="jLabel3" min="-2" max="-2" attributes="0"/>
<Component id="jLabel7" min="-2" max="-2" attributes="0"/>
</Group>
<EmptySpace min="-2" max="-2" attributes="0"/>
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" attributes="0">
<Component id="spinnerExposure" linkSize="1" min="-2" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Component id="deviceValuePanel3" linkSize="1" min="-2" pref="106" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Component id="deviceValuePanel4" min="-2" pref="127" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Component id="buttonShowDetectorPanel" min="-2" pref="127" max="-2" attributes="0"/>
</Group>
<Component id="textFOV" linkSize="1" min="-2" max="-2" attributes="0"/>
</Group>
</Group>
<Group type="102" alignment="0" attributes="0">
<EmptySpace min="86" pref="86" max="-2" attributes="0"/>
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" alignment="0" attributes="0">
<Component id="comboMode" linkSize="1" min="-2" max="-2" attributes="0"/>
@@ -60,24 +77,14 @@
<EmptySpace max="-2" attributes="0"/>
<Component id="buttonOpenVG10" min="-2" pref="127" max="-2" attributes="0"/>
</Group>
</Group>
<EmptySpace pref="118" max="32767" attributes="0"/>
</Group>
<Group type="102" attributes="0">
<Component id="renderer" max="32767" attributes="0"/>
<EmptySpace min="-2" max="-2" attributes="0"/>
<Group type="103" groupAlignment="0" attributes="0">
<Component id="checkMeasurements" min="-2" max="-2" attributes="0"/>
<Component id="comboScale" alignment="0" min="-2" pref="104" max="-2" attributes="0"/>
<Component id="jLabel4" min="-2" max="-2" attributes="0"/>
<Component id="jLabel6" alignment="0" min="-2" max="-2" attributes="0"/>
<Component id="jLabel5" min="-2" max="-2" attributes="0"/>
<Group type="103" alignment="0" groupAlignment="1" max="-2" attributes="0">
<Component id="spinnerMax" alignment="0" max="32767" attributes="0"/>
<Component id="spinnerMin" alignment="0" pref="72" max="32767" attributes="0"/>
<Group type="102" alignment="0" attributes="0">
<EmptySpace min="310" pref="310" max="-2" attributes="0"/>
<Component id="buttonDone" min="-2" pref="127" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Component id="buttonCloseVG10" min="-2" pref="127" max="-2" attributes="0"/>
</Group>
</Group>
<EmptySpace max="32767" attributes="0"/>
<EmptySpace pref="118" max="32767" attributes="0"/>
</Group>
</Group>
</Group>
@@ -114,6 +121,11 @@
<Component id="deviceValuePanel4" linkSize="2" alignment="2" min="-2" max="-2" attributes="0"/>
<Component id="buttonShowDetectorPanel" alignment="2" min="-2" pref="35" max="-2" attributes="0"/>
</Group>
<EmptySpace min="-2" max="-2" attributes="0"/>
<Group type="103" groupAlignment="3" attributes="0">
<Component id="jLabel7" alignment="3" min="-2" max="-2" attributes="0"/>
<Component id="textFOV" linkSize="2" alignment="3" min="-2" max="-2" attributes="0"/>
</Group>
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" attributes="0">
<EmptySpace min="-2" pref="36" max="-2" attributes="0"/>
@@ -134,7 +146,7 @@
</Group>
<Group type="102" alignment="0" attributes="0">
<EmptySpace max="-2" attributes="0"/>
<Component id="renderer" pref="409" max="32767" attributes="0"/>
<Component id="renderer" pref="368" max="32767" attributes="0"/>
</Group>
</Group>
</Group>
@@ -329,5 +341,19 @@
<Property name="text" type="java.lang.String" value="Min:"/>
</Properties>
</Component>
<Component class="javax.swing.JLabel" name="jLabel7">
<Properties>
<Property name="text" type="java.lang.String" value="FOV:"/>
</Properties>
</Component>
<Component class="javax.swing.JTextField" name="textFOV">
<Properties>
<Property name="horizontalAlignment" type="int" value="0"/>
<Property name="disabledTextColor" type="java.awt.Color" editor="org.netbeans.beaninfo.editors.ColorEditor">
<Color blue="0" green="0" red="0" type="rgb"/>
</Property>
<Property name="enabled" type="boolean" value="false"/>
</Properties>
</Component>
</SubComponents>
</Form>
plugins/Eiger.java
+77 -41
View File
@@ -6,6 +6,7 @@ import ch.psi.utils.State;
import java.io.IOException;
import java.util.logging.Level;
import java.util.concurrent.TimeUnit;
import javax.swing.SwingUtilities;
/**
*
@@ -69,16 +70,32 @@ public class Eiger extends Panel {
try{
spinnerExposure.setValue(exposure.take());
} catch (Exception ex){
}
}
comboDepth.setEnabled(bitDepth.isInitialized());
comboMode.setEnabled(mode.isInitialized());
spinnerExposure.setEnabled(exposure.isInitialized());
} finally{
updatingControls=false;
}
}
}
@Override
protected void onShow() {
super.onShow();
new Thread(()->{
String fov="";
try {
fov = String.valueOf(eval("microscope.get_preset_label()", true));
} catch (Exception ex) {
}
String label =fov;
SwingUtilities.invokeLater(()->{
textFOV.setText(label);
});
}).start();
}
//Callback to perform update - in event thread
@Override
@@ -112,6 +129,8 @@ public class Eiger extends Panel {
spinnerMin = new javax.swing.JSpinner();
jLabel5 = new javax.swing.JLabel();
jLabel6 = new javax.swing.JLabel();
jLabel7 = new javax.swing.JLabel();
textFOV = new javax.swing.JTextField();
renderer.setDeviceName("image");
renderer.setMode(ch.psi.pshell.imaging.RendererMode.Stretch);
@@ -224,6 +243,12 @@ public class Eiger extends Panel {
jLabel6.setText("Min:");
jLabel7.setText("FOV:");
textFOV.setHorizontalAlignment(javax.swing.JTextField.CENTER);
textFOV.setDisabledTextColor(new java.awt.Color(0, 0, 0));
textFOV.setEnabled(false);
javax.swing.GroupLayout layout = new javax.swing.GroupLayout(this);
this.setLayout(layout);
layout.setHorizontalGroup(
@@ -231,41 +256,6 @@ public class Eiger extends Panel {
.addGroup(layout.createSequentialGroup()
.addContainerGap()
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(layout.createSequentialGroup()
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addComponent(jLabel1)
.addComponent(jLabel2)
.addComponent(jLabel3))
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(layout.createSequentialGroup()
.addGap(224, 224, 224)
.addComponent(buttonDone, javax.swing.GroupLayout.PREFERRED_SIZE, 127, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(buttonCloseVG10, javax.swing.GroupLayout.PREFERRED_SIZE, 127, javax.swing.GroupLayout.PREFERRED_SIZE))
.addGroup(layout.createSequentialGroup()
.addComponent(spinnerExposure, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(deviceValuePanel3, javax.swing.GroupLayout.PREFERRED_SIZE, 106, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(deviceValuePanel4, javax.swing.GroupLayout.PREFERRED_SIZE, 127, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(buttonShowDetectorPanel, javax.swing.GroupLayout.PREFERRED_SIZE, 127, javax.swing.GroupLayout.PREFERRED_SIZE))
.addGroup(layout.createSequentialGroup()
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(layout.createSequentialGroup()
.addComponent(comboMode, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(deviceValuePanel1, javax.swing.GroupLayout.PREFERRED_SIZE, 106, javax.swing.GroupLayout.PREFERRED_SIZE))
.addGroup(layout.createSequentialGroup()
.addComponent(comboDepth, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(deviceValuePanel2, javax.swing.GroupLayout.PREFERRED_SIZE, 106, javax.swing.GroupLayout.PREFERRED_SIZE)))
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(buttonAquire, javax.swing.GroupLayout.PREFERRED_SIZE, 127, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(buttonOpenVG10, javax.swing.GroupLayout.PREFERRED_SIZE, 127, javax.swing.GroupLayout.PREFERRED_SIZE)))
.addContainerGap(118, Short.MAX_VALUE))
.addGroup(layout.createSequentialGroup()
.addComponent(renderer, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
@@ -278,10 +268,50 @@ public class Eiger extends Panel {
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.TRAILING, false)
.addComponent(spinnerMax, javax.swing.GroupLayout.Alignment.LEADING)
.addComponent(spinnerMin, javax.swing.GroupLayout.Alignment.LEADING, javax.swing.GroupLayout.DEFAULT_SIZE, 72, Short.MAX_VALUE)))
.addContainerGap(javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))))
.addContainerGap(javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
.addGroup(layout.createSequentialGroup()
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(layout.createSequentialGroup()
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addComponent(jLabel1)
.addComponent(jLabel2)
.addComponent(jLabel3)
.addComponent(jLabel7))
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(layout.createSequentialGroup()
.addComponent(spinnerExposure, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(deviceValuePanel3, javax.swing.GroupLayout.PREFERRED_SIZE, 106, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(deviceValuePanel4, javax.swing.GroupLayout.PREFERRED_SIZE, 127, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(buttonShowDetectorPanel, javax.swing.GroupLayout.PREFERRED_SIZE, 127, javax.swing.GroupLayout.PREFERRED_SIZE))
.addComponent(textFOV, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)))
.addGroup(layout.createSequentialGroup()
.addGap(86, 86, 86)
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(layout.createSequentialGroup()
.addComponent(comboMode, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(deviceValuePanel1, javax.swing.GroupLayout.PREFERRED_SIZE, 106, javax.swing.GroupLayout.PREFERRED_SIZE))
.addGroup(layout.createSequentialGroup()
.addComponent(comboDepth, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(deviceValuePanel2, javax.swing.GroupLayout.PREFERRED_SIZE, 106, javax.swing.GroupLayout.PREFERRED_SIZE)))
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(buttonAquire, javax.swing.GroupLayout.PREFERRED_SIZE, 127, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(buttonOpenVG10, javax.swing.GroupLayout.PREFERRED_SIZE, 127, javax.swing.GroupLayout.PREFERRED_SIZE))
.addGroup(layout.createSequentialGroup()
.addGap(310, 310, 310)
.addComponent(buttonDone, javax.swing.GroupLayout.PREFERRED_SIZE, 127, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(buttonCloseVG10, javax.swing.GroupLayout.PREFERRED_SIZE, 127, javax.swing.GroupLayout.PREFERRED_SIZE)))
.addContainerGap(118, Short.MAX_VALUE))))
);
layout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {comboDepth, comboMode, deviceValuePanel1, deviceValuePanel2, deviceValuePanel3, spinnerExposure});
layout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {comboDepth, comboMode, deviceValuePanel1, deviceValuePanel2, deviceValuePanel3, spinnerExposure, textFOV});
layout.setVerticalGroup(
layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
@@ -309,6 +339,10 @@ public class Eiger extends Panel {
.addComponent(deviceValuePanel3, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
.addComponent(deviceValuePanel4, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
.addComponent(buttonShowDetectorPanel, javax.swing.GroupLayout.PREFERRED_SIZE, 35, javax.swing.GroupLayout.PREFERRED_SIZE))
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
.addComponent(jLabel7)
.addComponent(textFOV, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(layout.createSequentialGroup()
.addGap(36, 36, 36)
@@ -328,10 +362,10 @@ public class Eiger extends Panel {
.addGap(0, 0, Short.MAX_VALUE))
.addGroup(layout.createSequentialGroup()
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(renderer, javax.swing.GroupLayout.DEFAULT_SIZE, 409, Short.MAX_VALUE))))
.addComponent(renderer, javax.swing.GroupLayout.DEFAULT_SIZE, 368, Short.MAX_VALUE))))
);
layout.linkSize(javax.swing.SwingConstants.VERTICAL, new java.awt.Component[] {comboDepth, comboMode, deviceValuePanel1, deviceValuePanel2, deviceValuePanel3, deviceValuePanel4, spinnerExposure});
layout.linkSize(javax.swing.SwingConstants.VERTICAL, new java.awt.Component[] {comboDepth, comboMode, deviceValuePanel1, deviceValuePanel2, deviceValuePanel3, deviceValuePanel4, spinnerExposure, textFOV});
}// </editor-fold>//GEN-END:initComponents
@@ -515,9 +549,11 @@ public class Eiger extends Panel {
private javax.swing.JLabel jLabel4;
private javax.swing.JLabel jLabel5;
private javax.swing.JLabel jLabel6;
private javax.swing.JLabel jLabel7;
private ch.psi.pshell.imaging.Renderer renderer;
private javax.swing.JSpinner spinnerExposure;
private javax.swing.JSpinner spinnerMax;
private javax.swing.JSpinner spinnerMin;
private javax.swing.JTextField textFOV;
// End of variables declaration//GEN-END:variables
}
plugins/Imaging.form
+595
View File
@@ -0,0 +1,595 @@
<?xml version="1.0" encoding="UTF-8" ?>
<Form version="1.5" maxVersion="1.9" type="org.netbeans.modules.form.forminfo.JPanelFormInfo">
<NonVisualComponents>
<Component class="javax.swing.ButtonGroup" name="buttonGroup1">
</Component>
</NonVisualComponents>
<AuxValues>
<AuxValue name="FormSettings_autoResourcing" type="java.lang.Integer" value="0"/>
<AuxValue name="FormSettings_autoSetComponentName" type="java.lang.Boolean" value="false"/>
<AuxValue name="FormSettings_generateFQN" type="java.lang.Boolean" value="true"/>
<AuxValue name="FormSettings_generateMnemonicsCode" type="java.lang.Boolean" value="false"/>
<AuxValue name="FormSettings_i18nAutoMode" type="java.lang.Boolean" value="false"/>
<AuxValue name="FormSettings_layoutCodeTarget" type="java.lang.Integer" value="1"/>
<AuxValue name="FormSettings_listenerGenerationStyle" type="java.lang.Integer" value="0"/>
<AuxValue name="FormSettings_variablesLocal" type="java.lang.Boolean" value="false"/>
<AuxValue name="FormSettings_variablesModifier" type="java.lang.Integer" value="2"/>
</AuxValues>
<Layout>
<DimensionLayout dim="0">
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" alignment="0" attributes="0">
<Component id="jPanel4" min="-2" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Component id="renderer" pref="376" max="32767" attributes="0"/>
</Group>
</Group>
</DimensionLayout>
<DimensionLayout dim="1">
<Group type="103" groupAlignment="0" attributes="0">
<Component id="renderer" max="32767" attributes="0"/>
<Component id="jPanel4" max="32767" attributes="0"/>
</Group>
</DimensionLayout>
</Layout>
<SubComponents>
<Component class="ch.psi.pshell.imaging.Renderer" name="renderer">
<Properties>
<Property name="mode" type="ch.psi.pshell.imaging.RendererMode" editor="org.netbeans.modules.form.editors.EnumEditor">
<Value id="Fit"/>
</Property>
</Properties>
</Component>
<Container class="javax.swing.JPanel" name="jPanel4">
<Layout>
<DimensionLayout dim="0">
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" attributes="0">
<EmptySpace max="-2" attributes="0"/>
<Group type="103" groupAlignment="0" max="-2" attributes="0">
<Component id="jPanel3" max="32767" attributes="0"/>
<Component id="jPanel2" max="32767" attributes="0"/>
<Component id="jPanel1" alignment="0" max="32767" attributes="0"/>
</Group>
<EmptySpace max="32767" attributes="0"/>
</Group>
<Group type="102" alignment="1" attributes="0">
<EmptySpace max="32767" attributes="0"/>
<Component id="buttonAbort" min="-2" max="-2" attributes="0"/>
<EmptySpace max="32767" attributes="0"/>
</Group>
</Group>
</DimensionLayout>
<DimensionLayout dim="1">
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" attributes="0">
<EmptySpace max="-2" attributes="0"/>
<Component id="jPanel1" min="-2" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Component id="jPanel2" min="-2" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Component id="jPanel3" min="-2" max="-2" attributes="0"/>
<EmptySpace max="32767" attributes="0"/>
<Component id="buttonAbort" min="-2" max="-2" attributes="0"/>
<EmptySpace max="32767" attributes="0"/>
</Group>
</Group>
</DimensionLayout>
</Layout>
<SubComponents>
<Container class="javax.swing.JPanel" name="jPanel2">
<Properties>
<Property name="border" type="javax.swing.border.Border" editor="org.netbeans.modules.form.editors2.BorderEditor">
<Border info="org.netbeans.modules.form.compat2.border.TitledBorderInfo">
<TitledBorder title="Auto-Intensity"/>
</Border>
</Property>
</Properties>
<Layout>
<DimensionLayout dim="0">
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" alignment="0" attributes="0">
<EmptySpace max="32767" attributes="0"/>
<Component id="buttonStartAutoIntensity" min="-2" max="-2" attributes="0"/>
<EmptySpace max="32767" attributes="0"/>
</Group>
</Group>
</DimensionLayout>
<DimensionLayout dim="1">
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" alignment="0" attributes="0">
<EmptySpace max="32767" attributes="0"/>
<Component id="buttonStartAutoIntensity" min="-2" max="-2" attributes="0"/>
<EmptySpace max="32767" attributes="0"/>
</Group>
</Group>
</DimensionLayout>
</Layout>
<SubComponents>
<Component class="javax.swing.JButton" name="buttonStartAutoIntensity">
<Properties>
<Property name="text" type="java.lang.String" value="Start"/>
</Properties>
<Events>
<EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="buttonStartAutoIntensityActionPerformed"/>
</Events>
</Component>
</SubComponents>
</Container>
<Component class="javax.swing.JButton" name="buttonAbort">
<Properties>
<Property name="text" type="java.lang.String" value="Abort"/>
</Properties>
<Events>
<EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="buttonAbortActionPerformed"/>
</Events>
</Component>
<Container class="javax.swing.JPanel" name="jPanel1">
<Properties>
<Property name="border" type="javax.swing.border.Border" editor="org.netbeans.modules.form.editors2.BorderEditor">
<Border info="org.netbeans.modules.form.compat2.border.TitledBorderInfo">
<TitledBorder title="ROI"/>
</Border>
</Property>
</Properties>
<Layout>
<DimensionLayout dim="0">
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" attributes="0">
<EmptySpace max="-2" attributes="0"/>
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" attributes="0">
<Component id="buttonRoiClear" linkSize="3" min="-2" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Component id="buttonRoiSet" linkSize="3" min="-2" pref="60" max="-2" attributes="0"/>
<EmptySpace type="separate" max="32767" attributes="0"/>
<Component id="jLabel1" linkSize="1" min="-2" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Component id="spinnerWidth" linkSize="2" min="-2" max="-2" attributes="0"/>
</Group>
<Group type="102" alignment="1" attributes="0">
<EmptySpace min="0" pref="0" max="32767" attributes="0"/>
<Component id="jLabel2" linkSize="1" min="-2" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Component id="spinnerHeight" linkSize="2" min="-2" max="-2" attributes="0"/>
</Group>
</Group>
</Group>
</Group>
</DimensionLayout>
<DimensionLayout dim="1">
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" alignment="0" attributes="0">
<EmptySpace max="-2" attributes="0"/>
<Group type="103" groupAlignment="3" attributes="0">
<Component id="buttonRoiClear" alignment="3" min="-2" max="-2" attributes="0"/>
<Component id="buttonRoiSet" alignment="3" min="-2" max="-2" attributes="0"/>
<Component id="jLabel1" alignment="3" min="-2" max="-2" attributes="0"/>
<Component id="spinnerWidth" alignment="3" min="-2" max="-2" attributes="0"/>
</Group>
<EmptySpace max="-2" attributes="0"/>
<Group type="103" groupAlignment="3" attributes="0">
<Component id="jLabel2" alignment="3" min="-2" max="-2" attributes="0"/>
<Component id="spinnerHeight" alignment="3" min="-2" max="-2" attributes="0"/>
</Group>
<EmptySpace max="-2" attributes="0"/>
</Group>
</Group>
</DimensionLayout>
</Layout>
<SubComponents>
<Component class="javax.swing.JButton" name="buttonRoiSet">
<Properties>
<Property name="text" type="java.lang.String" value="Set"/>
</Properties>
<Events>
<EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="buttonRoiSetActionPerformed"/>
</Events>
</Component>
<Component class="javax.swing.JButton" name="buttonRoiClear">
<Properties>
<Property name="text" type="java.lang.String" value="Clear"/>
</Properties>
<Events>
<EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="buttonRoiClearActionPerformed"/>
</Events>
</Component>
<Component class="javax.swing.JLabel" name="jLabel1">
<Properties>
<Property name="text" type="java.lang.String" value="Width:"/>
</Properties>
</Component>
<Component class="javax.swing.JSpinner" name="spinnerWidth">
<Properties>
<Property name="model" type="javax.swing.SpinnerModel" editor="org.netbeans.modules.form.editors2.SpinnerModelEditor">
<SpinnerModel type="list">
<ListItem value="16"/>
<ListItem value="32"/>
<ListItem value="64"/>
<ListItem value="128"/>
<ListItem value="256"/>
<ListItem value="512"/>
</SpinnerModel>
</Property>
<Property name="value" type="java.lang.Object" editor="org.netbeans.modules.form.RADConnectionPropertyEditor">
<Connection code="&quot;256&quot;" type="code"/>
</Property>
</Properties>
<Events>
<EventHandler event="stateChanged" listener="javax.swing.event.ChangeListener" parameters="javax.swing.event.ChangeEvent" handler="spinnerWidthStateChanged"/>
</Events>
</Component>
<Component class="javax.swing.JLabel" name="jLabel2">
<Properties>
<Property name="text" type="java.lang.String" value="Height"/>
</Properties>
</Component>
<Component class="javax.swing.JSpinner" name="spinnerHeight">
<Properties>
<Property name="model" type="javax.swing.SpinnerModel" editor="org.netbeans.modules.form.editors2.SpinnerModelEditor">
<SpinnerModel type="list">
<ListItem value="16"/>
<ListItem value="32"/>
<ListItem value="64"/>
<ListItem value="128"/>
<ListItem value="256"/>
<ListItem value="512"/>
</SpinnerModel>
</Property>
<Property name="value" type="java.lang.Object" editor="org.netbeans.modules.form.RADConnectionPropertyEditor">
<Connection code="&quot;256&quot;" type="code"/>
</Property>
</Properties>
<Events>
<EventHandler event="stateChanged" listener="javax.swing.event.ChangeListener" parameters="javax.swing.event.ChangeEvent" handler="spinnerHeightStateChanged"/>
</Events>
</Component>
</SubComponents>
</Container>
<Container class="javax.swing.JPanel" name="jPanel3">
<Properties>
<Property name="border" type="javax.swing.border.Border" editor="org.netbeans.modules.form.editors2.BorderEditor">
<Border info="org.netbeans.modules.form.compat2.border.TitledBorderInfo">
<TitledBorder title="Auto-Focus"/>
</Border>
</Property>
</Properties>
<Layout>
<DimensionLayout dim="0">
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" alignment="0" attributes="0">
<Component id="jPanel5" min="-2" max="-2" attributes="0"/>
<EmptySpace type="separate" max="32767" attributes="0"/>
<Group type="103" groupAlignment="0" attributes="0">
<Component id="jLabel4" alignment="1" min="-2" max="-2" attributes="0"/>
<Component id="jLabel3" alignment="1" min="-2" max="-2" attributes="0"/>
<Component id="jLabel9" alignment="1" min="-2" max="-2" attributes="0"/>
</Group>
<EmptySpace max="-2" attributes="0"/>
<Group type="103" groupAlignment="0" attributes="0">
<Component id="spinnerAverage" linkSize="5" alignment="1" min="-2" max="-2" attributes="0"/>
<Component id="spinnerRuns" linkSize="5" alignment="1" min="-2" max="-2" attributes="0"/>
<Component id="spinnerExposition" linkSize="5" alignment="1" min="-2" max="-2" attributes="0"/>
</Group>
</Group>
<Group type="102" attributes="0">
<EmptySpace min="-2" pref="97" max="-2" attributes="0"/>
<Component id="buttonStartAutoFocus" min="-2" max="-2" attributes="0"/>
<EmptySpace max="32767" attributes="0"/>
</Group>
<Group type="102" alignment="1" attributes="0">
<EmptySpace min="0" pref="0" max="32767" attributes="0"/>
<Component id="jPanel6" min="-2" max="-2" attributes="0"/>
</Group>
</Group>
</DimensionLayout>
<DimensionLayout dim="1">
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" alignment="0" attributes="0">
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" attributes="0">
<EmptySpace min="-2" pref="4" max="-2" attributes="0"/>
<Group type="103" groupAlignment="3" attributes="0">
<Component id="jLabel3" alignment="3" min="-2" max="-2" attributes="0"/>
<Component id="spinnerAverage" alignment="3" min="-2" max="-2" attributes="0"/>
</Group>
<EmptySpace min="-2" pref="4" max="-2" attributes="0"/>
<Group type="103" groupAlignment="3" attributes="0">
<Component id="jLabel4" alignment="3" min="-2" max="-2" attributes="0"/>
<Component id="spinnerRuns" alignment="3" min="-2" max="-2" attributes="0"/>
</Group>
<EmptySpace min="-2" pref="4" max="-2" attributes="0"/>
<Group type="103" groupAlignment="3" attributes="0">
<Component id="jLabel9" alignment="3" min="-2" max="-2" attributes="0"/>
<Component id="spinnerExposition" alignment="3" min="-2" max="-2" attributes="0"/>
</Group>
</Group>
<Group type="102" alignment="0" attributes="0">
<EmptySpace max="-2" attributes="0"/>
<Component id="jPanel5" min="-2" max="-2" attributes="0"/>
</Group>
</Group>
<EmptySpace max="32767" attributes="0"/>
<Component id="jPanel6" min="-2" max="-2" attributes="0"/>
<EmptySpace type="unrelated" max="32767" attributes="0"/>
<Component id="buttonStartAutoFocus" min="-2" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
</Group>
</Group>
</DimensionLayout>
</Layout>
<SubComponents>
<Component class="javax.swing.JButton" name="buttonStartAutoFocus">
<Properties>
<Property name="text" type="java.lang.String" value="Start"/>
</Properties>
<Events>
<EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="buttonStartAutoFocusActionPerformed"/>
</Events>
</Component>
<Component class="javax.swing.JLabel" name="jLabel3">
<Properties>
<Property name="text" type="java.lang.String" value="Average:"/>
</Properties>
</Component>
<Component class="javax.swing.JSpinner" name="spinnerAverage">
<Properties>
<Property name="model" type="javax.swing.SpinnerModel" editor="org.netbeans.modules.form.editors2.SpinnerModelEditor">
<SpinnerModel initial="1" maximum="10" minimum="1" numberType="java.lang.Integer" stepSize="1" type="number"/>
</Property>
</Properties>
<Events>
<EventHandler event="stateChanged" listener="javax.swing.event.ChangeListener" parameters="javax.swing.event.ChangeEvent" handler="spinnerAverageStateChanged"/>
</Events>
</Component>
<Component class="javax.swing.JLabel" name="jLabel4">
<Properties>
<Property name="text" type="java.lang.String" value="Runs:"/>
</Properties>
</Component>
<Component class="javax.swing.JSpinner" name="spinnerRuns">
<Properties>
<Property name="model" type="javax.swing.SpinnerModel" editor="org.netbeans.modules.form.editors2.SpinnerModelEditor">
<SpinnerModel initial="1" maximum="10" minimum="0" numberType="java.lang.Integer" stepSize="1" type="number"/>
</Property>
</Properties>
<Events>
<EventHandler event="stateChanged" listener="javax.swing.event.ChangeListener" parameters="javax.swing.event.ChangeEvent" handler="spinnerRunsStateChanged"/>
</Events>
</Component>
<Container class="javax.swing.JPanel" name="jPanel5">
<Layout>
<DimensionLayout dim="0">
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" attributes="0">
<EmptySpace max="-2" attributes="0"/>
<Group type="103" groupAlignment="0" attributes="0">
<Component id="radioObjective" alignment="0" min="-2" max="-2" attributes="0"/>
<Component id="radioStigA" min="-2" max="-2" attributes="0"/>
<Component id="radioStigB" min="-2" max="-2" attributes="0"/>
<Component id="radioAll" min="-2" max="-2" attributes="0"/>
</Group>
<EmptySpace max="32767" attributes="0"/>
</Group>
</Group>
</DimensionLayout>
<DimensionLayout dim="1">
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" alignment="0" attributes="0">
<EmptySpace min="0" pref="0" max="-2" attributes="0"/>
<Component id="radioObjective" min="-2" max="-2" attributes="0"/>
<EmptySpace min="0" pref="0" max="-2" attributes="0"/>
<Component id="radioStigA" min="-2" max="-2" attributes="0"/>
<EmptySpace min="0" pref="0" max="-2" attributes="0"/>
<Component id="radioStigB" min="-2" max="-2" attributes="0"/>
<EmptySpace min="0" pref="0" max="-2" attributes="0"/>
<Component id="radioAll" min="-2" max="-2" attributes="0"/>
<EmptySpace min="0" pref="0" max="-2" attributes="0"/>
</Group>
</Group>
</DimensionLayout>
</Layout>
<SubComponents>
<Component class="javax.swing.JRadioButton" name="radioObjective">
<Properties>
<Property name="buttonGroup" type="javax.swing.ButtonGroup" editor="org.netbeans.modules.form.RADComponent$ButtonGroupPropertyEditor">
<ComponentRef name="buttonGroup1"/>
</Property>
<Property name="selected" type="boolean" value="true"/>
<Property name="text" type="java.lang.String" value="Objective"/>
</Properties>
<Events>
<EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="radioObjectiveActionPerformed"/>
</Events>
</Component>
<Component class="javax.swing.JRadioButton" name="radioStigA">
<Properties>
<Property name="buttonGroup" type="javax.swing.ButtonGroup" editor="org.netbeans.modules.form.RADComponent$ButtonGroupPropertyEditor">
<ComponentRef name="buttonGroup1"/>
</Property>
<Property name="text" type="java.lang.String" value="Stigmator A"/>
</Properties>
<Events>
<EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="radioStigAActionPerformed"/>
</Events>
</Component>
<Component class="javax.swing.JRadioButton" name="radioStigB">
<Properties>
<Property name="buttonGroup" type="javax.swing.ButtonGroup" editor="org.netbeans.modules.form.RADComponent$ButtonGroupPropertyEditor">
<ComponentRef name="buttonGroup1"/>
</Property>
<Property name="text" type="java.lang.String" value="Stigmator B"/>
</Properties>
<Events>
<EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="radioStigBActionPerformed"/>
</Events>
</Component>
<Component class="javax.swing.JRadioButton" name="radioAll">
<Properties>
<Property name="buttonGroup" type="javax.swing.ButtonGroup" editor="org.netbeans.modules.form.RADComponent$ButtonGroupPropertyEditor">
<ComponentRef name="buttonGroup1"/>
</Property>
<Property name="text" type="java.lang.String" value="All"/>
</Properties>
<Events>
<EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="radioAllActionPerformed"/>
</Events>
</Component>
</SubComponents>
</Container>
<Container class="javax.swing.JPanel" name="jPanel6">
<Layout>
<DimensionLayout dim="0">
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" attributes="0">
<EmptySpace max="-2" attributes="0"/>
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" attributes="0">
<Component id="jLabel5" linkSize="6" min="-2" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Component id="spinnerRangeObj" linkSize="7" min="-2" max="-2" attributes="0"/>
</Group>
<Group type="102" attributes="0">
<Component id="jLabel6" linkSize="6" min="-2" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Component id="spinnerStepObj" linkSize="7" min="-2" max="-2" attributes="0"/>
</Group>
<Group type="102" attributes="0">
<Component id="jLabel7" linkSize="6" min="-2" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Component id="spinnerRangeStig" linkSize="7" min="-2" max="-2" attributes="0"/>
</Group>
<Group type="102" attributes="0">
<Component id="jLabel8" linkSize="6" min="-2" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Component id="spinnerStepStig" linkSize="7" min="-2" max="-2" attributes="0"/>
</Group>
</Group>
<EmptySpace min="0" pref="0" max="-2" attributes="0"/>
</Group>
</Group>
</DimensionLayout>
<DimensionLayout dim="1">
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" attributes="0">
<EmptySpace min="0" pref="0" max="-2" attributes="0"/>
<Group type="103" groupAlignment="3" attributes="0">
<Component id="jLabel5" alignment="3" min="-2" max="-2" attributes="0"/>
<Component id="spinnerRangeObj" alignment="3" min="-2" max="-2" attributes="0"/>
</Group>
<EmptySpace min="0" pref="0" max="-2" attributes="0"/>
<Group type="103" groupAlignment="3" attributes="0">
<Component id="jLabel6" alignment="3" min="-2" max="-2" attributes="0"/>
<Component id="spinnerStepObj" alignment="3" min="-2" max="-2" attributes="0"/>
</Group>
<EmptySpace max="-2" attributes="0"/>
<Group type="103" groupAlignment="3" attributes="0">
<Component id="jLabel7" alignment="3" min="-2" max="-2" attributes="0"/>
<Component id="spinnerRangeStig" alignment="3" min="-2" max="-2" attributes="0"/>
</Group>
<EmptySpace min="0" pref="0" max="-2" attributes="0"/>
<Group type="103" groupAlignment="3" attributes="0">
<Component id="jLabel8" alignment="3" min="-2" max="-2" attributes="0"/>
<Component id="spinnerStepStig" alignment="3" min="-2" max="-2" attributes="0"/>
</Group>
<EmptySpace max="-2" attributes="0"/>
</Group>
</Group>
</DimensionLayout>
</Layout>
<SubComponents>
<Component class="javax.swing.JSpinner" name="spinnerRangeObj">
<Properties>
<Property name="model" type="javax.swing.SpinnerModel" editor="org.netbeans.modules.form.editors2.SpinnerModelEditor">
<SpinnerModel initial="4.0" maximum="10.0" minimum="1.0" numberType="java.lang.Double" stepSize="1.0" type="number"/>
</Property>
</Properties>
<Events>
<EventHandler event="stateChanged" listener="javax.swing.event.ChangeListener" parameters="javax.swing.event.ChangeEvent" handler="spinnerRangeObjStateChanged"/>
</Events>
</Component>
<Component class="javax.swing.JLabel" name="jLabel5">
<Properties>
<Property name="horizontalAlignment" type="int" value="11"/>
<Property name="text" type="java.lang.String" value="Range Objective:"/>
</Properties>
</Component>
<Component class="javax.swing.JLabel" name="jLabel6">
<Properties>
<Property name="horizontalAlignment" type="int" value="11"/>
<Property name="text" type="java.lang.String" value="Step Objective:"/>
</Properties>
</Component>
<Component class="javax.swing.JSpinner" name="spinnerStepObj">
<Properties>
<Property name="model" type="javax.swing.SpinnerModel" editor="org.netbeans.modules.form.editors2.SpinnerModelEditor">
<SpinnerModel initial="0.2" maximum="1.0" minimum="0.1" numberType="java.lang.Double" stepSize="0.1" type="number"/>
</Property>
</Properties>
<Events>
<EventHandler event="stateChanged" listener="javax.swing.event.ChangeListener" parameters="javax.swing.event.ChangeEvent" handler="spinnerStepObjStateChanged"/>
</Events>
</Component>
<Component class="javax.swing.JLabel" name="jLabel7">
<Properties>
<Property name="horizontalAlignment" type="int" value="11"/>
<Property name="text" type="java.lang.String" value="Range Stigmator:"/>
</Properties>
</Component>
<Component class="javax.swing.JSpinner" name="spinnerRangeStig">
<Properties>
<Property name="model" type="javax.swing.SpinnerModel" editor="org.netbeans.modules.form.editors2.SpinnerModelEditor">
<SpinnerModel initial="20.0" maximum="40.0" minimum="1.0" numberType="java.lang.Double" stepSize="1.0" type="number"/>
</Property>
</Properties>
<Events>
<EventHandler event="stateChanged" listener="javax.swing.event.ChangeListener" parameters="javax.swing.event.ChangeEvent" handler="spinnerRangeStigStateChanged"/>
</Events>
</Component>
<Component class="javax.swing.JLabel" name="jLabel8">
<Properties>
<Property name="horizontalAlignment" type="int" value="11"/>
<Property name="text" type="java.lang.String" value="Step Stigmator:"/>
</Properties>
</Component>
<Component class="javax.swing.JSpinner" name="spinnerStepStig">
<Properties>
<Property name="model" type="javax.swing.SpinnerModel" editor="org.netbeans.modules.form.editors2.SpinnerModelEditor">
<SpinnerModel initial="2.0" maximum="10.0" minimum="1.0" numberType="java.lang.Double" stepSize="1.0" type="number"/>
</Property>
</Properties>
<Events>
<EventHandler event="stateChanged" listener="javax.swing.event.ChangeListener" parameters="javax.swing.event.ChangeEvent" handler="spinnerStepStigStateChanged"/>
</Events>
</Component>
</SubComponents>
</Container>
<Component class="javax.swing.JLabel" name="jLabel9">
<Properties>
<Property name="text" type="java.lang.String" value="Exposure:"/>
</Properties>
</Component>
<Component class="javax.swing.JSpinner" name="spinnerExposition">
<Properties>
<Property name="model" type="javax.swing.SpinnerModel" editor="org.netbeans.modules.form.editors2.SpinnerModelEditor">
<SpinnerModel initial="NaN" maximum="NaN" minimum="0.01" numberType="java.lang.Double" stepSize="1.0" type="number"/>
</Property>
</Properties>
<Events>
<EventHandler event="stateChanged" listener="javax.swing.event.ChangeListener" parameters="javax.swing.event.ChangeEvent" handler="spinnerExpositionStateChanged"/>
</Events>
</Component>
</SubComponents>
</Container>
</SubComponents>
</Container>
</SubComponents>
</Form>
plugins/Imaging.java
+747
View File
@@ -0,0 +1,747 @@
import ch.psi.pshell.imaging.Overlay;
import ch.psi.pshell.imaging.Overlays.Rect;
import ch.psi.pshell.imaging.Renderer;
import ch.psi.pshell.imaging.RendererListener;
import ch.psi.pshell.ui.Panel;
import ch.psi.utils.State;
import java.awt.Rectangle;
import java.util.HashMap;
/**
*
*/
public class Imaging extends Panel {
static double NaNd = Double.NaN; //Bug on editor?
public Imaging() {
initComponents();
renderer.addListener(rendererListener);
}
//Overridable callbacks
@Override
public void onInitialize(int runCount) {
try {
setGlobalVar("IMAGING_RENDERER", renderer);
setRoi(getRoi());
} catch (Exception ex) {
showException(ex);
}
}
@Override
public void onStateChange(State state, State former) {
buttonAbort.setEnabled(state.isProcessing());
updateButtons();
}
@Override
public void onExecutedFile(String fileName, Object result) {
}
//Callback to perform update - in event thread
@Override
protected void doUpdate() {
}
void updateButtons(){
boolean enabled = getState()==State.Ready;
boolean hasRoi = false;
try{
hasRoi = getRoi()!=null;
} catch (Exception ex){
}
buttonStartAutoFocus.setEnabled(hasRoi && enabled);
buttonStartAutoIntensity.setEnabled(enabled);
buttonRoiClear.setEnabled(hasRoi && enabled);
buttonRoiSet.setEnabled(!hasRoi && enabled);
spinnerAverage.setEnabled(enabled);
spinnerRuns.setEnabled(enabled);
spinnerExposition.setEnabled(enabled);
spinnerRangeObj.setEnabled((radioObjective.isSelected() || radioAll.isSelected()) && enabled);
spinnerStepObj.setEnabled(spinnerRangeObj.isEnabled());
spinnerRangeStig.setEnabled((!radioObjective.isSelected()) && enabled);
spinnerStepStig.setEnabled(spinnerRangeStig.isEnabled());
radioObjective.setEnabled(enabled);
radioStigA.setEnabled(enabled);
radioStigB.setEnabled(enabled);
radioAll.setEnabled(enabled);
}
@Override
protected void onShow() {
super.onShow();
renderer.setDeviceName("image");
}
@Override
protected void onHide() {
super.onHide();
renderer.setDeviceName(null);
}
Rectangle getRoi(){
return (Rectangle) getGlobalVar("IMAGING_ROI");
}
void setRoi(Rectangle roi){
setGlobalVar("IMAGING_ROI", roi);
try{
renderer.clearOverlays();
if (roi!=null){
Rect ov = new Rect(renderer.getPenProfile(), roi.getLocation(), roi.getSize());
ov.setMovable(true);
renderer.addOverlay(ov);
}
} finally {
updateButtons();
}
}
final RendererListener rendererListener = new RendererListener(){
@Override
public void onMoveFinished(Renderer renderer, Overlay overlay) {
setGlobalVar("IMAGING_ROI", overlay.getBounds());
}
@Override
public void onDeleted(Renderer renderer, Overlay overlay) {
if (getRoi()!=null){
setRoi(null);
}
}
};
@SuppressWarnings("unchecked")
// <editor-fold defaultstate="collapsed" desc="Generated Code">//GEN-BEGIN:initComponents
private void initComponents() {
buttonGroup1 = new javax.swing.ButtonGroup();
renderer = new ch.psi.pshell.imaging.Renderer();
jPanel4 = new javax.swing.JPanel();
jPanel2 = new javax.swing.JPanel();
buttonStartAutoIntensity = new javax.swing.JButton();
buttonAbort = new javax.swing.JButton();
jPanel1 = new javax.swing.JPanel();
buttonRoiSet = new javax.swing.JButton();
buttonRoiClear = new javax.swing.JButton();
jLabel1 = new javax.swing.JLabel();
spinnerWidth = new javax.swing.JSpinner();
jLabel2 = new javax.swing.JLabel();
spinnerHeight = new javax.swing.JSpinner();
jPanel3 = new javax.swing.JPanel();
buttonStartAutoFocus = new javax.swing.JButton();
jLabel3 = new javax.swing.JLabel();
spinnerAverage = new javax.swing.JSpinner();
jLabel4 = new javax.swing.JLabel();
spinnerRuns = new javax.swing.JSpinner();
jPanel5 = new javax.swing.JPanel();
radioObjective = new javax.swing.JRadioButton();
radioStigA = new javax.swing.JRadioButton();
radioStigB = new javax.swing.JRadioButton();
radioAll = new javax.swing.JRadioButton();
jPanel6 = new javax.swing.JPanel();
spinnerRangeObj = new javax.swing.JSpinner();
jLabel5 = new javax.swing.JLabel();
jLabel6 = new javax.swing.JLabel();
spinnerStepObj = new javax.swing.JSpinner();
jLabel7 = new javax.swing.JLabel();
spinnerRangeStig = new javax.swing.JSpinner();
jLabel8 = new javax.swing.JLabel();
spinnerStepStig = new javax.swing.JSpinner();
jLabel9 = new javax.swing.JLabel();
spinnerExposition = new javax.swing.JSpinner();
renderer.setMode(ch.psi.pshell.imaging.RendererMode.Fit);
jPanel2.setBorder(javax.swing.BorderFactory.createTitledBorder("Auto-Intensity"));
buttonStartAutoIntensity.setText("Start");
buttonStartAutoIntensity.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
buttonStartAutoIntensityActionPerformed(evt);
}
});
javax.swing.GroupLayout jPanel2Layout = new javax.swing.GroupLayout(jPanel2);
jPanel2.setLayout(jPanel2Layout);
jPanel2Layout.setHorizontalGroup(
jPanel2Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(jPanel2Layout.createSequentialGroup()
.addContainerGap(javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.addComponent(buttonStartAutoIntensity)
.addContainerGap(javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
);
jPanel2Layout.setVerticalGroup(
jPanel2Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(jPanel2Layout.createSequentialGroup()
.addContainerGap(javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.addComponent(buttonStartAutoIntensity)
.addContainerGap(javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
);
buttonAbort.setText("Abort");
buttonAbort.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
buttonAbortActionPerformed(evt);
}
});
jPanel1.setBorder(javax.swing.BorderFactory.createTitledBorder("ROI"));
buttonRoiSet.setText("Set");
buttonRoiSet.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
buttonRoiSetActionPerformed(evt);
}
});
buttonRoiClear.setText("Clear");
buttonRoiClear.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
buttonRoiClearActionPerformed(evt);
}
});
jLabel1.setText("Width:");
spinnerWidth.setModel(new javax.swing.SpinnerListModel(new String[] {"16", "32", "64", "128", "256", "512"}));
spinnerWidth.setValue("256");
spinnerWidth.addChangeListener(new javax.swing.event.ChangeListener() {
public void stateChanged(javax.swing.event.ChangeEvent evt) {
spinnerWidthStateChanged(evt);
}
});
jLabel2.setText("Height");
spinnerHeight.setModel(new javax.swing.SpinnerListModel(new String[] {"16", "32", "64", "128", "256", "512"}));
spinnerHeight.setValue("256");
spinnerHeight.addChangeListener(new javax.swing.event.ChangeListener() {
public void stateChanged(javax.swing.event.ChangeEvent evt) {
spinnerHeightStateChanged(evt);
}
});
javax.swing.GroupLayout jPanel1Layout = new javax.swing.GroupLayout(jPanel1);
jPanel1.setLayout(jPanel1Layout);
jPanel1Layout.setHorizontalGroup(
jPanel1Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(jPanel1Layout.createSequentialGroup()
.addContainerGap()
.addGroup(jPanel1Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(jPanel1Layout.createSequentialGroup()
.addComponent(buttonRoiClear)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(buttonRoiSet, javax.swing.GroupLayout.PREFERRED_SIZE, 60, javax.swing.GroupLayout.PREFERRED_SIZE)
.addGap(18, 18, Short.MAX_VALUE)
.addComponent(jLabel1)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(spinnerWidth, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
.addGroup(javax.swing.GroupLayout.Alignment.TRAILING, jPanel1Layout.createSequentialGroup()
.addGap(0, 0, Short.MAX_VALUE)
.addComponent(jLabel2)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(spinnerHeight, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))))
);
jPanel1Layout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {jLabel1, jLabel2});
jPanel1Layout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {spinnerHeight, spinnerWidth});
jPanel1Layout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {buttonRoiClear, buttonRoiSet});
jPanel1Layout.setVerticalGroup(
jPanel1Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(jPanel1Layout.createSequentialGroup()
.addContainerGap()
.addGroup(jPanel1Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
.addComponent(buttonRoiClear)
.addComponent(buttonRoiSet)
.addComponent(jLabel1)
.addComponent(spinnerWidth, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addGroup(jPanel1Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
.addComponent(jLabel2)
.addComponent(spinnerHeight, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
.addContainerGap())
);
jPanel3.setBorder(javax.swing.BorderFactory.createTitledBorder("Auto-Focus"));
buttonStartAutoFocus.setText("Start");
buttonStartAutoFocus.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
buttonStartAutoFocusActionPerformed(evt);
}
});
jLabel3.setText("Average:");
spinnerAverage.setModel(new javax.swing.SpinnerNumberModel(1, 1, 10, 1));
spinnerAverage.addChangeListener(new javax.swing.event.ChangeListener() {
public void stateChanged(javax.swing.event.ChangeEvent evt) {
spinnerAverageStateChanged(evt);
}
});
jLabel4.setText("Runs:");
spinnerRuns.setModel(new javax.swing.SpinnerNumberModel(1, 0, 10, 1));
spinnerRuns.addChangeListener(new javax.swing.event.ChangeListener() {
public void stateChanged(javax.swing.event.ChangeEvent evt) {
spinnerRunsStateChanged(evt);
}
});
buttonGroup1.add(radioObjective);
radioObjective.setSelected(true);
radioObjective.setText("Objective");
radioObjective.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
radioObjectiveActionPerformed(evt);
}
});
buttonGroup1.add(radioStigA);
radioStigA.setText("Stigmator A");
radioStigA.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
radioStigAActionPerformed(evt);
}
});
buttonGroup1.add(radioStigB);
radioStigB.setText("Stigmator B");
radioStigB.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
radioStigBActionPerformed(evt);
}
});
buttonGroup1.add(radioAll);
radioAll.setText("All");
radioAll.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
radioAllActionPerformed(evt);
}
});
javax.swing.GroupLayout jPanel5Layout = new javax.swing.GroupLayout(jPanel5);
jPanel5.setLayout(jPanel5Layout);
jPanel5Layout.setHorizontalGroup(
jPanel5Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(jPanel5Layout.createSequentialGroup()
.addContainerGap()
.addGroup(jPanel5Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addComponent(radioObjective)
.addComponent(radioStigA)
.addComponent(radioStigB)
.addComponent(radioAll))
.addContainerGap(javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
);
jPanel5Layout.setVerticalGroup(
jPanel5Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(jPanel5Layout.createSequentialGroup()
.addGap(0, 0, 0)
.addComponent(radioObjective)
.addGap(0, 0, 0)
.addComponent(radioStigA)
.addGap(0, 0, 0)
.addComponent(radioStigB)
.addGap(0, 0, 0)
.addComponent(radioAll)
.addGap(0, 0, 0))
);
spinnerRangeObj.setModel(new javax.swing.SpinnerNumberModel(4.0d, 1.0d, 10.0d, 1.0d));
spinnerRangeObj.addChangeListener(new javax.swing.event.ChangeListener() {
public void stateChanged(javax.swing.event.ChangeEvent evt) {
spinnerRangeObjStateChanged(evt);
}
});
jLabel5.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
jLabel5.setText("Range Objective:");
jLabel6.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
jLabel6.setText("Step Objective:");
spinnerStepObj.setModel(new javax.swing.SpinnerNumberModel(0.2d, 0.1d, 1.0d, 0.1d));
spinnerStepObj.addChangeListener(new javax.swing.event.ChangeListener() {
public void stateChanged(javax.swing.event.ChangeEvent evt) {
spinnerStepObjStateChanged(evt);
}
});
jLabel7.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
jLabel7.setText("Range Stigmator:");
spinnerRangeStig.setModel(new javax.swing.SpinnerNumberModel(20.0d, 1.0d, 40.0d, 1.0d));
spinnerRangeStig.addChangeListener(new javax.swing.event.ChangeListener() {
public void stateChanged(javax.swing.event.ChangeEvent evt) {
spinnerRangeStigStateChanged(evt);
}
});
jLabel8.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
jLabel8.setText("Step Stigmator:");
spinnerStepStig.setModel(new javax.swing.SpinnerNumberModel(2.0d, 1.0d, 10.0d, 1.0d));
spinnerStepStig.addChangeListener(new javax.swing.event.ChangeListener() {
public void stateChanged(javax.swing.event.ChangeEvent evt) {
spinnerStepStigStateChanged(evt);
}
});
javax.swing.GroupLayout jPanel6Layout = new javax.swing.GroupLayout(jPanel6);
jPanel6.setLayout(jPanel6Layout);
jPanel6Layout.setHorizontalGroup(
jPanel6Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(jPanel6Layout.createSequentialGroup()
.addContainerGap()
.addGroup(jPanel6Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(jPanel6Layout.createSequentialGroup()
.addComponent(jLabel5)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(spinnerRangeObj, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
.addGroup(jPanel6Layout.createSequentialGroup()
.addComponent(jLabel6)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(spinnerStepObj, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
.addGroup(jPanel6Layout.createSequentialGroup()
.addComponent(jLabel7)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(spinnerRangeStig, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
.addGroup(jPanel6Layout.createSequentialGroup()
.addComponent(jLabel8)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(spinnerStepStig, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)))
.addGap(0, 0, 0))
);
jPanel6Layout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {jLabel5, jLabel6, jLabel7, jLabel8});
jPanel6Layout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {spinnerRangeObj, spinnerRangeStig, spinnerStepObj, spinnerStepStig});
jPanel6Layout.setVerticalGroup(
jPanel6Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(jPanel6Layout.createSequentialGroup()
.addGap(0, 0, 0)
.addGroup(jPanel6Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
.addComponent(jLabel5)
.addComponent(spinnerRangeObj, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
.addGap(0, 0, 0)
.addGroup(jPanel6Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
.addComponent(jLabel6)
.addComponent(spinnerStepObj, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addGroup(jPanel6Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
.addComponent(jLabel7)
.addComponent(spinnerRangeStig, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
.addGap(0, 0, 0)
.addGroup(jPanel6Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
.addComponent(jLabel8)
.addComponent(spinnerStepStig, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
.addContainerGap())
);
jLabel9.setText("Exposure:");
spinnerExposition.setModel(new javax.swing.SpinnerNumberModel(NaNd, 0.01d, NaNd, 1.0d));
spinnerExposition.addChangeListener(new javax.swing.event.ChangeListener() {
public void stateChanged(javax.swing.event.ChangeEvent evt) {
spinnerExpositionStateChanged(evt);
}
});
javax.swing.GroupLayout jPanel3Layout = new javax.swing.GroupLayout(jPanel3);
jPanel3.setLayout(jPanel3Layout);
jPanel3Layout.setHorizontalGroup(
jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(jPanel3Layout.createSequentialGroup()
.addComponent(jPanel5, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
.addGap(18, 18, Short.MAX_VALUE)
.addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addComponent(jLabel4, javax.swing.GroupLayout.Alignment.TRAILING)
.addComponent(jLabel3, javax.swing.GroupLayout.Alignment.TRAILING)
.addComponent(jLabel9, javax.swing.GroupLayout.Alignment.TRAILING))
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addComponent(spinnerAverage, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
.addComponent(spinnerRuns, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
.addComponent(spinnerExposition, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)))
.addGroup(jPanel3Layout.createSequentialGroup()
.addGap(97, 97, 97)
.addComponent(buttonStartAutoFocus)
.addContainerGap(javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
.addGroup(javax.swing.GroupLayout.Alignment.TRAILING, jPanel3Layout.createSequentialGroup()
.addGap(0, 0, Short.MAX_VALUE)
.addComponent(jPanel6, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
);
jPanel3Layout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {spinnerAverage, spinnerExposition, spinnerRuns});
jPanel3Layout.setVerticalGroup(
jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(jPanel3Layout.createSequentialGroup()
.addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(jPanel3Layout.createSequentialGroup()
.addGap(4, 4, 4)
.addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
.addComponent(jLabel3)
.addComponent(spinnerAverage, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
.addGap(4, 4, 4)
.addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
.addComponent(jLabel4)
.addComponent(spinnerRuns, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
.addGap(4, 4, 4)
.addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
.addComponent(jLabel9)
.addComponent(spinnerExposition, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)))
.addGroup(jPanel3Layout.createSequentialGroup()
.addContainerGap()
.addComponent(jPanel5, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)))
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.addComponent(jPanel6, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.UNRELATED, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.addComponent(buttonStartAutoFocus)
.addContainerGap())
);
javax.swing.GroupLayout jPanel4Layout = new javax.swing.GroupLayout(jPanel4);
jPanel4.setLayout(jPanel4Layout);
jPanel4Layout.setHorizontalGroup(
jPanel4Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(jPanel4Layout.createSequentialGroup()
.addContainerGap()
.addGroup(jPanel4Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING, false)
.addComponent(jPanel3, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.addComponent(jPanel2, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.addComponent(jPanel1, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
.addContainerGap(javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
.addGroup(javax.swing.GroupLayout.Alignment.TRAILING, jPanel4Layout.createSequentialGroup()
.addContainerGap(javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.addComponent(buttonAbort)
.addContainerGap(javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
);
jPanel4Layout.setVerticalGroup(
jPanel4Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(jPanel4Layout.createSequentialGroup()
.addContainerGap()
.addComponent(jPanel1, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(jPanel2, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(jPanel3, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.addComponent(buttonAbort)
.addContainerGap(javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
);
javax.swing.GroupLayout layout = new javax.swing.GroupLayout(this);
this.setLayout(layout);
layout.setHorizontalGroup(
layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(layout.createSequentialGroup()
.addComponent(jPanel4, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addComponent(renderer, javax.swing.GroupLayout.DEFAULT_SIZE, 376, Short.MAX_VALUE))
);
layout.setVerticalGroup(
layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addComponent(renderer, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.addComponent(jPanel4, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
);
}// </editor-fold>//GEN-END:initComponents
private void buttonRoiClearActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_buttonRoiClearActionPerformed
try {
setRoi(null);
} catch (Exception ex) {
showException(ex);
}
}//GEN-LAST:event_buttonRoiClearActionPerformed
private void buttonRoiSetActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_buttonRoiSetActionPerformed
try {
Rectangle roi = new Rectangle(0,0,Integer.valueOf(spinnerWidth.getValue().toString()),Integer.valueOf(spinnerHeight.getValue().toString()));
setRoi(roi);
} catch (Exception ex) {
showException(ex);
}
}//GEN-LAST:event_buttonRoiSetActionPerformed
private void spinnerWidthStateChanged(javax.swing.event.ChangeEvent evt) {//GEN-FIRST:event_spinnerWidthStateChanged
try {
Rectangle roi = getRoi();
if (roi!=null){
roi.width = Integer.valueOf(spinnerWidth.getValue().toString());
setRoi(roi);
}
} catch (Exception ex) {
showException(ex);
}
}//GEN-LAST:event_spinnerWidthStateChanged
private void spinnerHeightStateChanged(javax.swing.event.ChangeEvent evt) {//GEN-FIRST:event_spinnerHeightStateChanged
try {
Rectangle roi = getRoi();
if (roi!=null){
roi.height = Integer.valueOf(spinnerHeight.getValue().toString());
setRoi(roi);
}
} catch (Exception ex) {
showException(ex);
}
}//GEN-LAST:event_spinnerHeightStateChanged
private void buttonAbortActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_buttonAbortActionPerformed
try {
abort();
} catch (Exception ex) {
showException(ex);
}
}//GEN-LAST:event_buttonAbortActionPerformed
private void buttonStartAutoFocusActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_buttonStartAutoFocusActionPerformed
try {
HashMap args = new HashMap();
String scan_type = "all";
if (radioObjective.isSelected()){
scan_type = "obj";
} else if (radioStigA.isSelected()){
scan_type = "stiga";
} else if (radioStigB.isSelected()){
scan_type = "stigb";
}
int average = (Integer)spinnerAverage.getValue();
int runs = (Integer)spinnerRuns.getValue();
Double exposure = (Double) spinnerExposition.getValue();
//runAsync("templates/AutoFocus", args).handle((ret, t) -> {
//auto_focus(range_obj=4.0, step_obj=0.2, range_stig=20.0, step_stig=2.0, average=1, runs=2, roi=None):
String cmd = "auto_focus(scan_type='" + scan_type + "'" +
", range_obj=" + spinnerRangeObj.getValue() +
", step_obj=" + spinnerStepObj.getValue() +
", range_stig=" + spinnerRangeStig.getValue() +
", step_stig=" + spinnerStepStig.getValue() +
", average=" + average +
", runs=" + runs +
", renderer=IMAGING_RENDERER"+
", roi=IMAGING_ROI"+
", exposure=" + (Double.isNaN(exposure) ? "None" : exposure) + ")";
this.evalAsync(cmd).handle((ret, t) -> {
if ((t != null) && (!getContext().isAborted())) {
showException((Exception) t);
}
return t;
});
} catch (Exception ex) {
showException(ex);
}
}//GEN-LAST:event_buttonStartAutoFocusActionPerformed
private void buttonStartAutoIntensityActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_buttonStartAutoIntensityActionPerformed
try {
//String cmd = "scan_contrast(girder_x, 0.05, 0.005, average=3)";
String cmd = "auto_intensity(roi=IMAGING_ROI)";
this.evalAsync(cmd).handle((ret, t) -> {
if ((t != null) && (!getContext().isAborted())) {
showException((Exception) t);
}
return t;
});
} catch (Exception ex) {
showException(ex);
}
}//GEN-LAST:event_buttonStartAutoIntensityActionPerformed
private void spinnerAverageStateChanged(javax.swing.event.ChangeEvent evt) {//GEN-FIRST:event_spinnerAverageStateChanged
// TODO add your handling code here:
}//GEN-LAST:event_spinnerAverageStateChanged
private void spinnerRunsStateChanged(javax.swing.event.ChangeEvent evt) {//GEN-FIRST:event_spinnerRunsStateChanged
// TODO add your handling code here:
}//GEN-LAST:event_spinnerRunsStateChanged
private void radioStigAActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_radioStigAActionPerformed
updateButtons();
}//GEN-LAST:event_radioStigAActionPerformed
private void spinnerRangeObjStateChanged(javax.swing.event.ChangeEvent evt) {//GEN-FIRST:event_spinnerRangeObjStateChanged
// TODO add your handling code here:
}//GEN-LAST:event_spinnerRangeObjStateChanged
private void spinnerStepObjStateChanged(javax.swing.event.ChangeEvent evt) {//GEN-FIRST:event_spinnerStepObjStateChanged
// TODO add your handling code here:
}//GEN-LAST:event_spinnerStepObjStateChanged
private void spinnerRangeStigStateChanged(javax.swing.event.ChangeEvent evt) {//GEN-FIRST:event_spinnerRangeStigStateChanged
// TODO add your handling code here:
}//GEN-LAST:event_spinnerRangeStigStateChanged
private void spinnerStepStigStateChanged(javax.swing.event.ChangeEvent evt) {//GEN-FIRST:event_spinnerStepStigStateChanged
// TODO add your handling code here:
}//GEN-LAST:event_spinnerStepStigStateChanged
private void radioAllActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_radioAllActionPerformed
updateButtons();
}//GEN-LAST:event_radioAllActionPerformed
private void radioObjectiveActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_radioObjectiveActionPerformed
updateButtons();
}//GEN-LAST:event_radioObjectiveActionPerformed
private void radioStigBActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_radioStigBActionPerformed
updateButtons();
}//GEN-LAST:event_radioStigBActionPerformed
private void spinnerExpositionStateChanged(javax.swing.event.ChangeEvent evt) {//GEN-FIRST:event_spinnerExpositionStateChanged
// TODO add your handling code here:
}//GEN-LAST:event_spinnerExpositionStateChanged
// Variables declaration - do not modify//GEN-BEGIN:variables
private javax.swing.JButton buttonAbort;
private javax.swing.ButtonGroup buttonGroup1;
private javax.swing.JButton buttonRoiClear;
private javax.swing.JButton buttonRoiSet;
private javax.swing.JButton buttonStartAutoFocus;
private javax.swing.JButton buttonStartAutoIntensity;
private javax.swing.JLabel jLabel1;
private javax.swing.JLabel jLabel2;
private javax.swing.JLabel jLabel3;
private javax.swing.JLabel jLabel4;
private javax.swing.JLabel jLabel5;
private javax.swing.JLabel jLabel6;
private javax.swing.JLabel jLabel7;
private javax.swing.JLabel jLabel8;
private javax.swing.JLabel jLabel9;
private javax.swing.JPanel jPanel1;
private javax.swing.JPanel jPanel2;
private javax.swing.JPanel jPanel3;
private javax.swing.JPanel jPanel4;
private javax.swing.JPanel jPanel5;
private javax.swing.JPanel jPanel6;
private javax.swing.JRadioButton radioAll;
private javax.swing.JRadioButton radioObjective;
private javax.swing.JRadioButton radioStigA;
private javax.swing.JRadioButton radioStigB;
private ch.psi.pshell.imaging.Renderer renderer;
private javax.swing.JSpinner spinnerAverage;
private javax.swing.JSpinner spinnerExposition;
private javax.swing.JSpinner spinnerHeight;
private javax.swing.JSpinner spinnerRangeObj;
private javax.swing.JSpinner spinnerRangeStig;
private javax.swing.JSpinner spinnerRuns;
private javax.swing.JSpinner spinnerStepObj;
private javax.swing.JSpinner spinnerStepStig;
private javax.swing.JSpinner spinnerWidth;
// End of variables declaration//GEN-END:variables
}
plugins/Initialization.form
+47
View File
@@ -0,0 +1,47 @@
<?xml version="1.0" encoding="UTF-8" ?>
<Form version="1.2" maxVersion="1.9" type="org.netbeans.modules.form.forminfo.JPanelFormInfo">
<AuxValues>
<AuxValue name="FormSettings_autoResourcing" type="java.lang.Integer" value="0"/>
<AuxValue name="FormSettings_autoSetComponentName" type="java.lang.Boolean" value="false"/>
<AuxValue name="FormSettings_generateFQN" type="java.lang.Boolean" value="true"/>
<AuxValue name="FormSettings_generateMnemonicsCode" type="java.lang.Boolean" value="false"/>
<AuxValue name="FormSettings_i18nAutoMode" type="java.lang.Boolean" value="false"/>
<AuxValue name="FormSettings_layoutCodeTarget" type="java.lang.Integer" value="1"/>
<AuxValue name="FormSettings_listenerGenerationStyle" type="java.lang.Integer" value="0"/>
<AuxValue name="FormSettings_variablesLocal" type="java.lang.Boolean" value="false"/>
<AuxValue name="FormSettings_variablesModifier" type="java.lang.Integer" value="2"/>
<AuxValue name="designerSize" type="java.awt.Dimension" value="-84,-19,0,5,115,114,0,18,106,97,118,97,46,97,119,116,46,68,105,109,101,110,115,105,111,110,65,-114,-39,-41,-84,95,68,20,2,0,2,73,0,6,104,101,105,103,104,116,73,0,5,119,105,100,116,104,120,112,0,0,1,44,0,0,1,91"/>
</AuxValues>
<Layout>
<DimensionLayout dim="0">
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" alignment="0" attributes="0">
<EmptySpace min="-2" pref="49" max="-2" attributes="0"/>
<Component id="buttonExecShellCmd" min="-2" pref="198" max="-2" attributes="0"/>
<EmptySpace pref="100" max="32767" attributes="0"/>
</Group>
</Group>
</DimensionLayout>
<DimensionLayout dim="1">
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" alignment="0" attributes="0">
<EmptySpace min="-2" pref="30" max="-2" attributes="0"/>
<Component id="buttonExecShellCmd" min="-2" max="-2" attributes="0"/>
<EmptySpace pref="243" max="32767" attributes="0"/>
</Group>
</Group>
</DimensionLayout>
</Layout>
<SubComponents>
<Component class="javax.swing.JButton" name="buttonExecShellCmd">
<Properties>
<Property name="text" type="java.lang.String" value="Init"/>
</Properties>
<Events>
<EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="buttonExecShellCmdActionPerformed"/>
</Events>
</Component>
</SubComponents>
</Form>
plugins/Initialization.java
+83
View File
@@ -0,0 +1,83 @@
import ch.psi.pshell.ui.Panel;
import javax.swing.JButton;
/*
* To change this license header, choose License Headers in Project Properties.
* To change this template file, choose Tools | Templates
* and open the template in the editor.
*/
/**
*
* @author gac-x11ma
*/
public class Initialization extends Panel {
/**
* Creates new form Initialization
*/
public Initialization() {
initComponents();
}
/**
* This method is called from within the constructor to initialize the form.
* WARNING: Do NOT modify this code. The content of this method is always
* regenerated by the Form Editor.
*/
// <editor-fold defaultstate="collapsed" desc="Generated Code">//GEN-BEGIN:initComponents
private void initComponents() {
buttonExecShellCmd = new javax.swing.JButton();
buttonExecShellCmd.setText("Init");
buttonExecShellCmd.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
buttonExecShellCmdActionPerformed(evt);
}
});
javax.swing.GroupLayout layout = new javax.swing.GroupLayout(this);
this.setLayout(layout);
layout.setHorizontalGroup(
layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(layout.createSequentialGroup()
.addGap(49, 49, 49)
.addComponent(buttonExecShellCmd, javax.swing.GroupLayout.PREFERRED_SIZE, 198, javax.swing.GroupLayout.PREFERRED_SIZE)
.addContainerGap(100, Short.MAX_VALUE))
);
layout.setVerticalGroup(
layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(layout.createSequentialGroup()
.addGap(30, 30, 30)
.addComponent(buttonExecShellCmd)
.addContainerGap(243, Short.MAX_VALUE))
);
}// </editor-fold>//GEN-END:initComponents
private void buttonExecShellCmdActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_buttonExecShellCmdActionPerformed
try {
String shellCommand = "exec_cmd(\"ls\")";
boolean background = false;
evalAsync(shellCommand, background).handle((ret, ex) -> {
((JButton) evt.getSource()).setEnabled(true);
if (ex != null) {
showException((Exception) ex);
} else {
getContext().scriptingLog(String.format("Shell command '%s' return value: %s", shellCommand, String.valueOf(ret)));
}
return ret;
});
((JButton) evt.getSource()).setEnabled(false);
} catch (Exception ex) {
showException(ex);
}
}//GEN-LAST:event_buttonExecShellCmdActionPerformed
// Variables declaration - do not modify//GEN-BEGIN:variables
private javax.swing.JButton buttonExecShellCmd;
// End of variables declaration//GEN-END:variables
}
plugins/TestLuka.form
+28
View File
@@ -0,0 +1,28 @@
<?xml version="1.0" encoding="UTF-8" ?>
<Form version="1.5" maxVersion="1.9" type="org.netbeans.modules.form.forminfo.JPanelFormInfo">
<AuxValues>
<AuxValue name="FormSettings_autoResourcing" type="java.lang.Integer" value="0"/>
<AuxValue name="FormSettings_autoSetComponentName" type="java.lang.Boolean" value="false"/>
<AuxValue name="FormSettings_generateFQN" type="java.lang.Boolean" value="true"/>
<AuxValue name="FormSettings_generateMnemonicsCode" type="java.lang.Boolean" value="false"/>
<AuxValue name="FormSettings_i18nAutoMode" type="java.lang.Boolean" value="false"/>
<AuxValue name="FormSettings_layoutCodeTarget" type="java.lang.Integer" value="1"/>
<AuxValue name="FormSettings_listenerGenerationStyle" type="java.lang.Integer" value="0"/>
<AuxValue name="FormSettings_variablesLocal" type="java.lang.Boolean" value="false"/>
<AuxValue name="FormSettings_variablesModifier" type="java.lang.Integer" value="2"/>
</AuxValues>
<Layout>
<DimensionLayout dim="0">
<Group type="103" groupAlignment="0" attributes="0">
<EmptySpace min="0" pref="449" max="32767" attributes="0"/>
</Group>
</DimensionLayout>
<DimensionLayout dim="1">
<Group type="103" groupAlignment="0" attributes="0">
<EmptySpace min="0" pref="137" max="32767" attributes="0"/>
</Group>
</DimensionLayout>
</Layout>
</Form>
plugins/TestLuka.java
+52
View File
@@ -0,0 +1,52 @@
import ch.psi.pshell.ui.Panel;
import ch.psi.utils.State;
/**
*
*/
public class TestLuka extends Panel {
public TestLuka() {
initComponents();
}
//Overridable callbacks
@Override
public void onInitialize(int runCount) {
}
@Override
public void onStateChange(State state, State former) {
}
@Override
public void onExecutedFile(String fileName, Object result) {
}
//Callback to perform update - in event thread
@Override
protected void doUpdate() {
}
@SuppressWarnings("unchecked")
// <editor-fold defaultstate="collapsed" desc="Generated Code">//GEN-BEGIN:initComponents
private void initComponents() {
javax.swing.GroupLayout layout = new javax.swing.GroupLayout(this);
this.setLayout(layout);
layout.setHorizontalGroup(
layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGap(0, 449, Short.MAX_VALUE)
);
layout.setVerticalGroup(
layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGap(0, 137, Short.MAX_VALUE)
);
}// </editor-fold>//GEN-END:initComponents
// Variables declaration - do not modify//GEN-BEGIN:variables
// End of variables declaration//GEN-END:variables
}
script/Test_Autofocus_Armin.py
+11 -11
View File
@@ -47,17 +47,17 @@ def update_roi():
r=scan_focus(objective, RANGE_OBJ, STEP_OBJ, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
update_roi()
r=scan_focus(obj_stig_a, RANGE_STIG, STEP_STIG, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
update_roi()
r=scan_focus(obj_stig_b, RANGE_STIG, STEP_STIG, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
update_roi()
r=scan_focus(objective, RANGE_OBJ, STEP_OBJ, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
update_roi()
r=scan_focus(obj_stig_a, RANGE_STIG, STEP_STIG, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
update_roi()
r=scan_focus(obj_stig_b, RANGE_STIG, STEP_STIG, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
update_roi()
r=scan_focus(objective, RANGE_OBJ, STEP_OBJ, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
# r=scan_focus(obj_stig_a, RANGE_STIG, STEP_STIG, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
# update_roi()
# r=scan_focus(obj_stig_b, RANGE_STIG, STEP_STIG, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
# update_roi()
# r=scan_focus(objective, RANGE_OBJ, STEP_OBJ, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
# update_roi()
# r=scan_focus(obj_stig_a, RANGE_STIG, STEP_STIG, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
# update_roi()
# r=scan_focus(obj_stig_b, RANGE_STIG, STEP_STIG, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
# update_roi()
# r=scan_focus(objective, RANGE_OBJ, STEP_OBJ, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
final_state = objective.read(),obj_stig_a.read(),obj_stig_b.read()
print "Final state:" , final_state
script/Users/Beck/stack_image_and_spectrum.py
+34
View File
@@ -0,0 +1,34 @@
#auto_intensity()
#time_sleep(2)
#TakeImage at 710 eV at the given polarization
# do autoajust, give 1 minute to settle, do image aquisition with 5 frame average and go to sleep after
# entire run should take 10 min per loop execution
#Constants
# otf_img(700, 750, time=1, delay = 0.1, exposure=0.2, roi="test", name="test", save_images=True)
AVERAGE1 = 1
AVERAGE2 = 5
EXPOSURE1 = 0.5
EXPOSURE2 = 1.0
MEASUREMENTS = 1
i = 0
#change_energy(709.4)
time.sleep(20)
for i in range(0, 30):
# open_vg10()
#time.sleep(1)
#auto_intensity()
#close_vg10()
time.sleep(30)
#open_vg10()
#otf_img(704, 720, time=1.5, delay = 0.1, exposure=0.5, roi="test", name="400C_H2", save_images=True)
#time.sleep(10)
#close_vg10()
abs_spec(ranges="Fe_L3__Arik_Beck_fine", roi="test", switch_pol = False, scans=1, exposure=EXPOSURE1, average=AVERAGE1)
time.sleep(10)
change_energy(709.4)
time.sleep(10)
take_image(scans=1, switch_pol=False, measurements=MEASUREMENTS, exposure=EXPOSURE1, average=AVERAGE2)
time.sleep(270)
print(i)
script/Users/Beck/stack_scan.py
+22
View File
@@ -0,0 +1,22 @@
#auto_intensity()
#time_sleep(2)
#TakeImage at 710 eV at the given polarization
# do autoajust, give 1 minute to settle, do image aquisition with 5 frame average and go to sleep after
# entire run should take 10 min per loop execution
#Constants
AVERAGE = 5
EXPOSURE = 1.0
MEASUREMENTS = 1
i = 0
change_energy(709.4)
time.sleep(60)
for i in range(0, 23):
# open_vg10()
#time.sleep(1)
#auto_intensity()
#close_vg10()
time.sleep(60)
take_image(scans=1, switch_pol=False, measurements=MEASUREMENTS, exposure=EXPOSURE, average=AVERAGE)
time.sleep(534)
print(i)
script/Users/SaraG/Sara_script1.py
+74
View File
@@ -0,0 +1,74 @@
#Constants
AVERAGE = 10
EXPOSURE = 5
MEASUREMENTS = 40
#TwoImages Two Pol with C+/C- and ID1 + ID2, tune-detune, at 710 eV
set_beamline_setup(id ="ID1_ID2", en=706.7, pol1="Circ_Plus", alp1=0.0, har1=1, off1=0.0, pol2="Circ_Minus", alp2=0.0, har2=1, off2=0.0)
two_pol(switching="Tune_Detune", sequence="A", measurements=MEASUREMENTS, exposure=EXPOSURE, average=AVERAGE)
time.sleep(2.0)
#TwoEnergies with lin hor polarization ID2 only (normal)
set_beamline_setup(id ="ID2", en=706.7, pol1="Lin_Hor")
two_energies(706.7, 703, measurements=MEASUREMENTS, exposure=EXPOSURE, average=AVERAGE)
time.sleep(2.0)
#TwoEnergies with lin hor polarization ID2 only (normal)
set_beamline_setup(id ="ID2", en=464.2, pol1="Lin_Hor")
two_energies(462.6, 458.2, measurements=MEASUREMENTS, exposure=EXPOSURE, average=AVERAGE)
time.sleep(2.0)
#Constants
AVERAGE2 = 4
EXPOSURE2 = 4.0
change_energy(703)
abs_spec(ranges="Fe_L32__Arik_Beck_fine", roi="saraROI", switch_pol=False, scans=1, exposure=EXPOSURE2, average=AVERAGE2)
#Constants
AVERAGE3 = 1
EXPOSURE3 = 4.0
change_energy(450)
abs_spec(ranges="Ti_Sara", roi="saraROI", switch_pol=False, scans=1, exposure=EXPOSURE3, average=AVERAGE3)
change_energy(523)
abs_spec(ranges="O_Sara", roi="saraROI", switch_pol=False, scans=1, exposure=EXPOSURE3, average=AVERAGE3)
#TakeImage at 710 eV at the given polarization
#change_energy(710)
#take_image(scans=1, switch_pol=False, measurements=MEASUREMENTS, exposure=EXPOSURE, average=AVERAGE)
#time.sleep(2.0)
#TwoImages Two Pol with C+/C- and ID1 + ID2, tune-detune, at 710 eV
#set_beamline_setup(id ="ID1_ID2", en=710, pol1="Circ_Plus", alp1=0.0, har1=1, off1=0.0, pol2="Circ_Minus", alp2=0.0, har2=1, off2=0.0)
#two_pol(switching="Tune_Detune", sequence="A", measurements=MEASUREMENTS, exposure=EXPOSURE, average=AVERAGE)
#time.sleep(2.0)
#TwoEnergies with lin hor polarization ID2 only (normal)
#set_beamline_setup(id ="ID2", en=710, pol1="Lin_Hor")
#two_energies(705, 710, measurements=MEASUREMENTS, exposure=EXPOSURE, average=AVERAGE)
#time.sleep(2.0)
#abs_spec(ranges=[[500.0, 1000.0, 100.0],], switch_pol=False, scans=1, exposure=EXPOSURE, average=AVERAGE) #Use manulally defined ranges and rois defined in GUI
#Direct functions to change energy, pol, offset:
#change_energy(700)
#change_pol(1, "Circ_Plus" ) #Pol on ID1: "Circ_Plus", "Circ_Minus" , "Lin_Hor", "Lin_Ver"
#change_pol(1, "Lin" , alpha = "0" ) #Lin pol on ID 1
#change_offset(1, 0.0) #offset on ID1
#Auto-switching:
#switch_pol()
#Restoring beamline state defined in last set_beamline_setut:
#restore_beamline_setup()
script/Users/SaraG/Sara_script2.py
+11
View File
@@ -0,0 +1,11 @@
set_exec_pars(open=False)
print('la')
run("templates/Eiger2Img", { \
"METHOD": "Take_Image", "AUTO_SAVE": True, \
"MEASUREMENTS": 1, "EXPOSURE": 1, "AVERAGE": 1, \
"SWITCHING": None, "SEQUENCE": None, \
"ENERGY_1":None, "ENERGY_2":None, \
"NUMBER_SCANS":1, "SWITCH_POL": False, \
})
script/Users/ales/Holder4.py
+1164 -848
View File
File diff suppressed because it is too large Load Diff
script/Users/filianina/E_scan_XMCD.py
+11 -5
View File
@@ -1,15 +1,21 @@
#Constants
AVERAGE = 1
EXPOSURE = 1.0
EXPOSURE = 2.0
MEASUREMENTS = 50
#Energies=[635, 635.5]
Energies=[637, 637.2, 637.4, 637.6, 637.8, 638, 638.2, 638.4, 638.6, 638.8, 639]
Energies=[]
step=0.2
for item in range(0,20,1):
Energies.append(round(642.0 - item*step, 1))
#Energies=[ 640.8,641,641.2,641.4,641.6,] #5 maximum
#Energies=[637, 637.2, 637.4, 637.6, 637.8, 638, 638.2, 638.4, 638.6, 638.8, 639, 639.2, 639.4, 639.6, 639.8, 640, 640.5, 641]
#TakeImage at 710 eV at the given polarization
change_energy(636)
change_energy(638.2)
#TwoImages Two Pol with C+/C- and ID1 + ID2, tune-detune, at 710 eV
set_beamline_setup(id ="ID1_ID2", en=636, pol1="Circ_Plus", alp1=0.0, har1=1, off1=0.0, pol2="Circ_Minus", alp2=0.0, har2=1, off2=0.0)
set_beamline_setup(id ="ID1_ID2", en=638.2, pol1="Circ_Plus", alp1=0.0, har1=1, off1=0.0, pol2="Circ_Minus", alp2=0.0, har2=1, off2=0.0)
time.sleep(2.0)
two_pol(switching="Tune_Detune", sequence="A", measurements=MEASUREMENTS, exposure=EXPOSURE, average=AVERAGE)
time.sleep(2.0)
for item in Energies:
change_energy(item)
script/Users/filianina/lupa_scan.py
+3 -3
View File
@@ -1,5 +1,5 @@
#Constants
AVERAGE = 1
AVERAGE = 3
EXPOSURE = 2.0
MEASUREMENTS = 50
@@ -9,11 +9,11 @@ change_energy(639)
time.sleep(2.0)
#TwoImages Two Pol with Lin_hor/lin_ver and ID1 + ID2, tune-detune, at 638.8 eV
set_beamline_setup(id ="ID1_ID2", en=638.6, pol1="Lin_Hor", alp1=0.0, har1=1, off1=0.0, pol2="Lin_Ver", alp2=90.0, har2=1, off2=0.0)
set_beamline_setup(id ="ID1_ID2", en=638.8, pol1="Lin_Hor", alp1=0.0, har1=1, off1=0.0, pol2="Lin_Ver", alp2=90.0, har2=1, off2=0.0)
two_pol(switching="Tune_Detune", sequence="A", measurements=MEASUREMENTS, exposure=EXPOSURE, average=AVERAGE)
time.sleep(2.0)
change_energy(637.6)
change_energy(637.5)
time.sleep(2.0)
two_pol(switching="Tune_Detune", sequence="A", measurements=MEASUREMENTS, exposure=EXPOSURE, average=AVERAGE)
time.sleep(2.0)
script/Users/filianina/xmld_xmcd_cicle.py
+32
View File
@@ -0,0 +1,32 @@
#Constants
AVERAGE = 4
EXPOSURE = 2.0
MEASUREMENTS = 50
#TakeImage at 710 eV at the given polarization
#change_energy(639)
#take_image(scans=1, switch_pol=False, measurements=MEASUREMENTS, exposure=EXPOSURE, average=AVERAGE)
#time.sleep(2.0)
#TwoImages Two Pol with Lin_hor/lin_ver and ID1 + ID2, tune-detune, at 638.8 eV
#set_beamline_setup(id ="ID1_ID2", en=638.9, pol1="Lin_Hor", alp1=0.0, har1=1, off1=0.0, pol2="Lin_Ver", alp2=90.0, har2=1, off2=0.0)
#two_pol(switching="Tune_Detune", sequence="A", measurements=MEASUREMENTS, exposure=EXPOSURE, average=AVERAGE)
#time.sleep(2.0)
for i in range(1):
change_energy(638.2)
time.sleep(2.0)
#TwoImages Two Pol with C+/C- and ID1 + ID2, tune-detune, at 710 eV
set_beamline_setup(id ="ID1_ID2", en=638.2, pol1="Circ_Plus", alp1=0.0, har1=1, off1=0.0, pol2="Circ_Minus", alp2=0.0, har2=1, off2=0.0)
two_pol(switching="Tune_Detune", sequence="A", measurements=MEASUREMENTS, exposure=EXPOSURE, average=AVERAGE)
time.sleep(2.0)
change_energy(637.6)
time.sleep(2.0)
set_beamline_setup(id ="ID1_ID2", en=637.6, pol1="Lin_Hor", alp1=0.0, har1=1, off1=0.0, pol2="Lin_Ver", alp2=90.0, har2=1, off2=0.0)
time.sleep(2.0)
two_pol(switching="Tune_Detune", sequence="A", measurements=MEASUREMENTS, exposure=EXPOSURE, average=AVERAGE)
time.sleep(2.0)
script/Users/steven/March2021_Holder7.py
+6 -4
View File
@@ -8,16 +8,18 @@ TRY.write(3.0)
TRZ.write(41.25)
time.sleep(1)
##Sodium K edge ***requires 3rd Harmonic***
#caput('X11MA-ID2:HARMONIC', 3)
#time.sleep(15)
#nr_loops=1
#for i in range(nr_loops):
# caput('X11MA-KEI10:RANGE', 7)
# caput('X11MA-KEI11:RANGE', 8)
# caput('X11MA-KEI12:RANGE', 9)
# otf(start=1070, end=1110, time=2, delay=10, mode='LINEAR', alpha = 0.0, offset=0.0, name='DB53_Na', folder='XAS/2021/2021_03/DB53/')
#caput('X11MA-ID2:HARMONIC', 1)
#time.sleep(15)
##Survey
#nr_loops=1
#for i in range(nr_loops):
@@ -29,7 +31,7 @@ time.sleep(1)
#Fluor + Fe edges
nr_loops=1
for i in range(nr_loops):
caput('X11MA-KEI10:RANGE', 7)
caput('X11MA-KEI10aput(':RANGE', 7)
caput('X11MA-KEI11:RANGE', 8)
caput('X11MA-KEI12:RANGE', 9)
otf(start=680, end=735, time=2, delay=10, mode='LINEAR', alpha = 0.0, offset=0.0, name='DB53_F-Fe', folder='XAS/2021/2021_03/DB53/')
script/Users/steven/September2021_Holder1.py
+1333
View File
File diff suppressed because it is too large Load Diff
script/beamline_init/ESlitCalib.py
+14
View File
@@ -0,0 +1,14 @@
#seting parameters
caput('X11MA-KEI10:RANGE', 6) # 6 --> 200 nA
exit_slit.move(30.0)
speed = exit_slit.getSpeed()
min_speed=exit_slit.getMinSpeed()
exit_slit.setSpeed(min_speed)
#scan Energy Slit
run('beamline_init/SlitCalib.py',{"Slit":exit_slit, "Slit_offset":exit_slit_offset, "detector":keithley_1a, "start":30, "end":-20.0, "step_size":1.0, "final_pos":20.0})
time.sleep(1)
#resetting parameters
caput('X11MA-KEI10:RANGE', 0) # 0--> AUTO
exit_slit.setSpeed(speed)
script/beamline_init/FESlitCalib.py
+14
View File
@@ -0,0 +1,14 @@
#seting parameters
caput('X11MA-KEI10:RANGE', 6) # 6 --> 200 nA
fe_slit_H_size.move(1.0)
fe_slit_V_size.move(1.0)
#scan SizeH
run('beamline_init/SlitCalib.py',{"Slit":fe_slit_H_size, "Slit_offset":fe_slit_H_size_offs, "detector":keithley_1a, "start":1.0, "end":-0.5, "step_size":0.03, "final_pos":1.0})
time.sleep(1)
#scan SizeV
#SlitCalib(Slit=fe_slit_V_size, Slit_offset=fe_slit_V_size_offs, detector = keithley_1a, start=1.0, end=-0.5, step_size=0.03, final_pos=1.0)
#resetting parameters
caput ('X11MA-FE-DSAPER', 0) # 0--> closed
caput('X11MA-KEI10:RANGE', 0) # 0--> AUTO
script/beamline_init/FE_Slit2DScan.py
+17
View File
@@ -0,0 +1,17 @@
STEPS = 10
class Line(ReadableArray):
def read(self):
r1 = cscan(fe_slit_V_ctr, (Keithley_1_raw), -0.5, 1.0 , steps=STEPS, save=False, hidden=True)
return r1[Keithley_1_raw]
def getSize(self):
return STEPS+1
def getCalibration(self):
return ArrayCalibration(0.15,-0.5)
line=Line()
set_device_alias(line, "FE scan")
lscan(fe_slit_H_ctr, line, -0.5, 1.0, 0.1, latency=1.0)
script/test/FE_ctrSlitCalib.py → script/beamline_init/FE_ctrSlitCalib.py
View File
script/beamline_init/InitCMU.py
+122
View File
@@ -0,0 +1,122 @@
import subprocess
import time
import traceback
running = False
counts = {}
def countHS(motor):
global counts
try:
time.sleep(1.0)
counts[motor]=0
def on_change(value):
global counts
print "HomeSW changed on" , motor, "to", value
if int(value) == 1:
counts[motor]=counts[motor]+1
with Channel(motor+".ATHM", callback=on_change, monitored=True, name="test") as ch:
if int(ch.read()) == 1:
counts[motor]=1
while(running==True):
time.sleep(0.1)
print "Home Switch motor "+motor +" reached "+ str(counts[motor]) + " times"
return counts[motor]
except:
print "Exception counting "+str(motor)
traceback.print_exc()
raise
def init():
try:
global running
running = True
print "startint CMU initilization"
x = caget('X11MA-OP-CM:ox')
y = caget('X11MA-OP-CM:oy')
z = caget('X11MA-OP-CM:oz')
Rx= caget('X11MA-OP-CM:oRx')
Ry= caget('X11MA-OP-CM:oRy')
Rz= caget('X11MA-OP-CM:oRz')
baf=caget('X11MA-OP2-CM:TRB.RBV')
print "Old motor positions: x = " +str(x)+ \
", y = " +str(y)+ \
", z = " +str(z)+ \
", Rx = " +str(Rx)+ \
", Ry = " +str(Ry)+ \
", Rz = " +str(Rz)+ \
", baffle = " +str(baf)
subprocess.call("X_X11MA_init-CMU.sh", shell=True)
print "Positions after initialisation: x = " +str(caget('X11MA-OP-CM:ox'))+ \
", y = " +str(caget('X11MA-OP-CM:oy'))+ \
", z = " +str(caget('X11MA-OP-CM:oz'))+ \
", Rx = " +str(caget('X11MA-OP-CM:oRx'))+ \
", Ry = " +str(caget('X11MA-OP-CM:oRy'))+ \
", Rz = " +str(caget('X11MA-OP-CM:oRz'))+ \
", baffle = " +str(caget('X11MA-OP2-CM:TRB.RBV'))
print "Restoring old motor positions"
caput('X11MA-OP-CM:y',y)
caput('X11MA-OP-CM:z',z)
caput('X11MA-OP-CM:Rx',Rx)
caput('X11MA-OP-CM:Ry',Ry)
caput('X11MA-OP-CM:Rz',Rz)
#check restored positions after restore
print "Restored positions: x = " +str(caget('X11MA-OP-CM:ox'))+ \
", y = " +str(caget('X11MA-OP-CM:oy'))+ \
", z = " +str(caget('X11MA-OP-CM:oz'))+ \
", Rx = " +str(caget('X11MA-OP-CM:oRx'))+ \
", Ry = " +str(caget('X11MA-OP-CM:oRy'))+ \
", Rz = " +str(caget('X11MA-OP-CM:oRz'))+ \
", baffle = " +str(caget('X11MA-OP2-CM:TRB.RBV'))
if(abs(caget('X11MA-OP-CM:ox')-x)>0.001):
print "X position not ok"
elif(abs(caget('X11MA-OP-CM:oy')-y)>0.001):
print "Y position not ok"
elif(abs(caget('X11MA-OP-CM:oz')-z)>0.001):
print "Z position not ok"
elif(abs(caget('X11MA-OP-CM:oRx')-Rx)>0.001):
print "Rx position not ok"
elif(abs(caget('X11MA-OP-CM:oRy')-Ry)>0.001):
print "Ry position not ok"
elif(abs(caget('X11MA-OP-CM:oRz')-Rz)>0.001):
print "Rz position not ok"
elif(abs(caget('X11MA-OP2-CM:TRB.RBV')-baf)>0.001):
print "baffle position not ok"
else:
print "All positions OK"
running = False
return 0
except:
print "Exception in init"
traceback.print_exc()
raise
#Fork and join
futures = fork(init,(countHS,("X11MA-OP2-CM:TRY",)), \
(countHS,("X11MA-OP2-CM:TRZ",)), \
(countHS,("X11MA-OP2-CM:ROX",)), \
(countHS,("X11MA-OP2-CM:ROY",)), \
(countHS,("X11MA-OP2-CM:ROZ",)), \
(countHS,("X11MA-OP2-CM:TRB",)) )
ret = join(futures)
#check home switch status after init
homesw=True
for i in range(1,5):
if(ret[i]!=1):
homesw=False
print "Home switch status for all motors: %s" %("OK" if homesw == True else "Not OK")
#final status report
if(homesw==True and ret[0]==0):
print "init-CMU: ==> done. OK!"
else:
print "init-CMU: ==> not done. NOT OK!"
script/beamline_init/InitFE.py
+123
View File
@@ -0,0 +1,123 @@
import time
import traceback
running = False
counts = {}
encoder_raw = {}
def crossZero(encoder):
global counts
global encoder_raw
try:
time.sleep(1.0)
counts[encoder]=0
if caget(encoder+".RVAL") > 0:
encoder_raw[encoder]=1
elif caget(encoder+".RVAL") < 0:
encoder_raw[encoder]=-1
def on_change(value):
global counts
global encoder_raw
if (encoder_raw[encoder]==1 and value < 0):
counts[encoder]=counts[encoder]+1
encoder_raw[encoder]=-1
print "Zero on" , encoder, "crossed"
elif(encoder_raw[encoder]==-1 and value > 0):
counts[encoder]=counts[encoder]+1
encoder_raw[encoder]=1
print "Zero on" , encoder, "crossed"
#if int(value) == 0:
# print "Raw vlaue on" , encoder, "crossed", value
# counts[encoder]=counts[encoder]+1
with Channel(encoder+".RVAL", callback=on_change, monitored=True, name="test") as ch:
while(running==True):
time.sleep(0.1)
print "Encoder "+encoder +" crossed 0 "+ str(counts[encoder]) + " times"
return counts[encoder]
except:
print "Exception counting "+str(encoder)
traceback.print_exc()
raise
def init():
try:
global running
running = True
print "startint FE slit initilization"
cenV = caget('X11MA-FE-SV:center')
cenH = caget('X11MA-FE-SH:center')
offV = caget('X11MA-FE-DSVER.A')
offH = caget('X11MA-FE-DSHOR.A')
print "Old motor positions: centerV = " +str(cenV)+ \
", centerH = " +str(cenH)+ \
", offset V = " +str(offV)+ \
", offset H = " +str(offH)
print "Initializing UP motor."
caput('X11MA-FE-DSUP:II.PROC',1)
time.sleep(1.0)
cawait('X11MA-FE-SV1:TR1.DMOV', 1)
print "Initializing DOWN motor."
caput('X11MA-FE-DSDW:II.PROC',1)
time.sleep(1.0)
cawait('X11MA-FE-SV1:TR2.DMOV', 1)
print "Initializing RING motor."
caput('X11MA-FE-DSRI:II.PROC',1)
time.sleep(1.0)
cawait('X11MA-FE-SH1:TR1.DMOV', 1)
print "Initializing WALL motor."
caput('X11MA-FE-DSWA:II.PROC',1)
time.sleep(1.0)
cawait('X11MA-FE-SH1:TR2.DMOV', 1)
print "Setting offH and offV to 0."
caput('X11MA-FE-DSVER.A',0)
caput('X11MA-FE-DSHOR.A',0)
print "Checking encoder offset values."
if(abs(caget('X11MA-FE-SV1:EC1Off')+42683)>10):
print "Up position not ok"
elif(abs(caget('X11MA-FE-SV1:EC2Off')+41362)>10):
print "Down position not ok"
elif(abs(caget('X11MA-FE-SH1:EC1Off')+40782)>10):
print "Ring position not ok"
elif(abs(caget('X11MA-FE-SH1:EC2Off')+39548)>10):
print "Wall position not ok"
else:
print "All positions OK"
print "restoring Center and off values"
caput('X11MA-FE-SV:center',cenV)
caput('X11MA-FE-SH:center',cenH)
caput('X11MA-FE-DSVER.A',offV)
caput('X11MA-FE-DSHOR.A',offH)
running = False
return 0
except:
print "Exception in init"
traceback.print_exc()
raise
#Fork and join
futures = fork(init,(crossZero,("X11MA-FE-SV1:EC1",)), \
(crossZero,("X11MA-FE-SV1:EC2",)), \
(crossZero,("X11MA-FE-SH1:EC1",)), \
(crossZero,("X11MA-FE-SH1:EC2",)) )
ret = join(futures)
#check zero crossing status after init
zerocr=True
for i in range(1,4):
if(ret[i] != 2):
zerocr=False
#final status report
print "Zero crossing status for all motors: %s" %("OK" if zerocr == True else "Not OK")
print "init FE-slits: ==> done. %s" % ("OK" if zerocr == True else "Not OK")
script/test/SlitCalib.py → script/beamline_init/SlitCalib.py
+9 -24
View File
@@ -5,24 +5,14 @@
from mathutils import fit_polynomial
from mathutils import PolynomialFunction
# Input parameters
Slit = exit_slit
Slit_offset = exit_slit_offset
detector = keithley_1a
start = 30.0
end = -20.0
step_size = 1.0
final_pos = 20.0
#setting parameters
if(Slit==exit_slit):
caput('X11MA-KEI10:RANGE', 6) # 6 --> 200 nA
Slit.move(start)
speed = Slit.getSpeed()
min_speed=Slit.getMinSpeed()
Slit.setSpeed(min_speed)
time.sleep(1)
# Input parameters (example)
#Slit = exit_slit
#Slit_offset = exit_slit_offset
#detector = keithley_1a
#start = 30.0
#end = -20.0
#step_size = 1.0
#final_pos = 20.0
# Execute the scan
result=cscan(Slit, detector, start, end, float(step_size))
@@ -70,12 +60,7 @@ print k
#change the offset
offset=Slit_offset.read()
Slit_offset.write(offset+k)
#resetting parameters
if(Slit == exit_slit):
caput('X11MA-KEI10:RANGE', 0) # 0--> AUTO
Slit.setSpeed(speed)
#Slit_offset.write(offset+k)
Slit.write(final_pos)
script/beamline_init/test.sh
Executable
+3
View File
@@ -0,0 +1,3 @@
ls
whoami
echo "init-CMU: ==> done"
script/devices/LEEM2000.py
Executable → Regular
+2 -2
View File
@@ -24,7 +24,7 @@ class LEEM2000(TcpDevice):
try:
pl = self.get_preset_label()
except:
pl = "unknown" if microscope.client.isConnected() else "offline"
pl = "unknown" if self.client.isConnected() else "offline"
value = "%1.3f | %s" % (hv,pl) if hv!="" or pl!="" else None
self.setCache(value, None)
@@ -113,7 +113,7 @@ class LEEM2000(TcpDevice):
cmd = "prl"
return self.send_receive(cmd, timeout, retries)
def get_high_voltage(c):
def get_high_voltage(self):
return self.high_voltage.get(False)
def get_child(self, var, name=None):
script/devices/eiger.py
Executable → Regular
+61 -5
View File
@@ -25,12 +25,30 @@ def stop_eiger_ioc():
subprocess.call("/work/sls/bin/X_X11MA_EigerStop.sh")
print "IOC stopped"
"""
def integrate_roi(source, x,y, w, h):
if source.data is None:
source.update()
roi = source.data.getRoi(Rectangle(x,y, w, h))
return roi.integrate(False)
"""
def integrate_roi(source, x,y, w, h):
if source.data is None:
source.update()
rect = Rectangle(x,y, w, h)
roi = source.data.getRoi(rect)
"""
outliers_mask = get_outliers_mask()
if outliers_mask is not None:
mask = outliers_mask.getRoi(rect)
roi.mult(mask)
outliers_threshold = get_outliers_threshold()
if outliers_threshold>0:
roi.threshold(outliers_threshold, False, 0.0)
"""
return roi.integrate(False)
class RoiIntensitySourceListener (ImageListener):
@@ -78,10 +96,12 @@ def create_roi_devices(roi_list, add = True):
def grab_frame(source, roi=None, wait_next=False, outliers_threshold=None, outliers_mask=None, retries=None, timeout=None):
global eiger_averaging_number_of_samples #, chrono_grab
#chrono_grab.waitTimeout(GRAB_MIN_TIME)
"""
if outliers_threshold is None:
outliers_threshold = get_outliers_threshold()
if outliers_mask is None:
outliers_mask = get_outliers_mask()
"""
if wait_next:
if retries is None:
retries = 3
@@ -89,11 +109,14 @@ def grab_frame(source, roi=None, wait_next=False, outliers_threshold=None, outli
timeout=10.0
exposures = 1 if (eiger_averaging_number_of_samples is None) else eiger_averaging_number_of_samples
retries=max(retries,1)
timeout = int(((eiger.exposure * eiger_averaging_number_of_samples) + timeout) * 1000)
timeout = int(((eiger.exposure * exposures) + timeout) * 1000)
for try_count in range(retries):
if str(eiger.grabMode)=="Single":
eiger.waitReady(5000)
eiger.start()
eiger.start()
elif str(eiger.grabMode)=="Continuous":
if not eiger.isStarted():
eiger.start()
try:
#eiger.getDataArray().waitCacheChange(timeout)
source.waitNext(timeout)
@@ -324,7 +347,9 @@ def apply_averaging_detector(value):
def average_eiger_frames(samples, roi=None, wait_next=False, sleep=0, outliers_threshold=None, outliers_mask=None, retries=None, timeout=None):
global eiger_averaging_number_of_samples #, chrono_eiger
sample = int(samples)
if is_averaging_detector():
if is_averaging_detector():
if caget("X11MA-ES1-SD1:Proc1:EnableFilter")!="Enable":
raise Excetion("Cannot average frames in Eiger: filter is disabled")
#chrono_eiger.waitTimeout(1000)
caput("X11MA-ES1-SD1:Proc1:NumFilter", samples)
caput("X11MA-ES1-SD1:cam1:NumCycles", samples)
@@ -371,7 +396,38 @@ def get_outliers_mask(data_type='f'):
eiger.setDataType(DataType.Float32)
eiger.getDataArray().monitored=True
class ProcImage(Filter):
def __init__(self):
Filter.__init__(self, "image")
self.roi=None
self.outliers_threshold=None
self.outliers_mask =None
def processData(self, data):
outliers_threshold = get_outliers_threshold() if (self.outliers_threshold is None) else self.outliers_threshold
outliers_mask = get_outliers_mask() if (self.outliers_mask is None) else self.outliers_mask
roi = self.roi
data=data.copy()
if roi is not None:
data = data.getRoi(Rectangle(roi[0], roi[1], roi[2], roi[3]))
#ret = load_image(img)
if outliers_mask is not None:
data.mult(outliers_mask)
if outliers_threshold>0:
data.threshold(outliers_threshold, False, None)
#chrono_grab = Chrono()
return data
def process(self, image, data):
return None #Does not generate BufferedImage here
#image.removeAllListeners()
proc_image=ProcImage()
raw.addListener(proc_image)
add_device(proc_image, True)
image.refresh()
if False:
integrate_roi(image, 10, 5, 20, 10)
script/local.py
Executable → Regular
+78 -41
View File
@@ -251,6 +251,15 @@ def otf2(start, end, time, delay = 0.0, mode = None, offset = None, alpha = None
"""
#folder = get_context().setup.expandPath("{year}_{month}/{date}");
run("templates/EnergyScan_v2", {"E1":start, "E2":end, "TIME":time, "DELAY":float(delay), "MODE":mode, "OFFSET":(offset), "FOLDER":folder, "FILE":name, "TAG":name, "ALPHA":float(alpha) if alpha is not None else None})
def otf_img(start, end, time, delay = 0.0, exposure=0.2, roi=None, name = None, save_images=False):
folder = get_context().setup.expandPath("{year}_{month}/{date}");
if is_string(roi):
with open(expand_path("{config}/ROIs/" + roi + ".roi"), 'rb') as f:
roi = OrderedDict()
for r in Serializer.decode(f.read(), Serializer.EncoderType.bin)[0]:
roi[str(r[0])] = [int(r[1]), int(r[2]), int(r[3]), int(r[4])]
run("templates/EnergyScan_img", {"E1":start, "E2":end, "TIME":time, "DELAY":float(delay), "FOLDER":folder, "FILE":name, "ROI":roi, "EXPOSURE":exposure, "SAVE_IMAGES": save_images})
def two_pol(switching="Tune_Detune", sequence="A", measurements=1, exposure=1.0, average=1, name = None):
@@ -323,6 +332,42 @@ def abs_spec(ranges, roi=None, switch_pol=False, scans=1, exposure=1.0, average=
})
###################################################################################################
#Settings
###################################################################################################
def set_dry_run(value):
"""
"""
set_setting("DRY_RUN", bool(value))
def get_dry_run():
"""
"""
return str(get_setting("DRY_RUN")).lower() == "true"
def set_outliers_threshold(value):
set_setting("OUTLIERS_THRESHOLD", int(value))
def get_outliers_threshold():
try:
return int(get_setting("OUTLIERS_THRESHOLD"))
except:
return 0
def get_outliers_mask_file():
return get_setting("OUTLIERS_MASK_FILE")
def write_metadata():
for name in ["proposer", "proposal", "pgroup", "sample"]:
value = get_setting(name)
set_attribute("/", name, value)
setting = get_setting("authors")
set_attribute("/", "authors", setting.split("|") if setting is not None else [""])
###################################################################################################
#Devices
@@ -534,8 +579,10 @@ class MeasurementsFilter(Filter):
filter_measurements = None
def start_measurements(measurements=["StdDev"], source = image, renderer=None):
def start_measurements(measurements=["StdDev"], source = None, renderer=None):
global filter_measurements
if source is None:
source = image
stop_measurements()
filter_measurements = MeasurementsFilter(measurements)
filter_measurements.start(string_to_obj(source), string_to_obj(renderer))
@@ -612,7 +659,9 @@ def play_sound(name):
try:
Audio.playFile(File(get_context().setup.expandPath("{home}/sounds/" + name + ".wav")), False)
except:
log("Error playing sound " + name + ": " + str(sys.exc_info()[1]), False)
#TODO: sound does not work when logged as e-account
if not Sys.getUserName().startswith("e"):
log("Error playing sound " + name + ": " + str(sys.exc_info()[1]), False)
###################################################################################################
@@ -786,44 +835,32 @@ def fit(ydata, xdata = None, limit_to_range=False):
run("templates/FocusScan")
def auto_focus():
run("templates/AutoFocus")
def auto_focus(scan_type="all", range_obj=4.0, step_obj=0.2, range_stig=20.0, step_stig=2.0, average=1, runs=2, renderer = None, roi=None, exposure=None):
"""
RANGE_OBJ = 4.0
STEP_OBJ = 0.2
RANGE_STIG = 20.0
STEP_STIG = 2.0
UPDATE_POSITION = True
AVERAGE = 1
RUNS = 2
width, height = eiger.getImageSize()
ROI = Rectangle(width/3, height/3, width/3, height/3,)
"""
run("templates/AutoFocus", { \
"SCAN_TYPE": scan_type, \
"RANGE_OBJ": float(range_obj), \
"STEP_OBJ": float(step_obj), \
"RANGE_STIG": float(range_stig), \
"STEP_STIG": float(step_stig), \
"AVERAGE": int(average), \
"RUNS": int(runs), \
"UPDATE_POSITION": True, \
"RENDERER": renderer, \
"ROI":roi, \
"EXPOSURE":exposure \
})
def auto_intensity():
return scan_focus(girder_x, 0.05, 0.005, average=3)
def auto_intensity(roi=None):
return scan_contrast(girder_x, 0.05, 0.005, roi, average=3)
###################################################################################################
#Settings
###################################################################################################
def set_dry_run(value):
"""
"""
set_setting("DRY_RUN", bool(value))
def get_dry_run():
"""
"""
return str(get_setting("DRY_RUN")).lower() == "true"
def set_outliers_threshold(value):
set_setting("OUTLIERS_THRESHOLD", int(value))
def get_outliers_threshold():
try:
return int(get_setting("OUTLIERS_THRESHOLD"))
except:
return 0
def get_outliers_mask_file():
return get_setting("OUTLIERS_MASK_FILE")
def write_metadata():
for name in ["proposer", "proposal", "pgroup", "sample"]:
value = get_setting(name)
set_attribute("/", name, value)
setting = get_setting("authors")
set_attribute("/", "authors", setting.split("|") if setting is not None else [""])
script/saved_dcument2_13sep2021
+32
View File
@@ -0,0 +1,32 @@
#wold be nice to print relative changes of the parameters
RANGE_OBJ = 1.0
STEP_OBJ = 0.1
RANGE_STIG = 10.0
STEP_STIG = 1.0
UPDATE_POSITION = True
AVERAGE = 1
width, height = eiger.getImageSize()
#ROI = Rectangle(width/3, height/3, width/3, height/3,)
#ROI = Rectangle(0, 0, width, height,)
ROI = Rectangle(200,100,256,256) #(x0,y0,delta_x(2**n), delta_y(2**n))
ROI = Rectangle(130,74,256,256)
ROI = Rectangle(180,170,256,256)
initial_state = get_focus_scan_pos()
print "Initial state:" , initial_state
set_focus_scan_roi(ROI)
#r=scan_focus(objective, RANGE_OBJ, STEP_OBJ,average = AVERAGE, update_position = UPDATE_POSITION)
r=scan_focus(obj_stig_a, RANGE_STIG, STEP_STIG, average = AVERAGE, update_position = UPDATE_POSITION)
#r=scan_focus(obj_stig_b, RANGE_STIG, STEP_STIG,average = AVERAGE, update_position = UPDATE_POSITION)
#r=scan_focus(objective, RANGE_OBJ, STEP_OBJ, average = AVERAGE, update_position = UPDATE_POSITION)
#r=scan_focus(obj_stig_a, RANGE_STIG, STEP_STIG, average = AVERAGE, update_position = UPDATE_POSITION)
#r=scan_focus(obj_stig_b, RANGE_STIG, STEP_STIG, average = AVERAGE, update_position = UPDATE_POSITION)
#r=scan_focus(objective, RANGE_OBJ, STEP_OBJ, average = AVERAGE, update_position = UPDATE_POSITION)#
final_state = get_focus_scan_pos()
print "Final state:" , final_state
script/saved_document_13sep2021
+44
View File
@@ -0,0 +1,44 @@
#wold be nice to print relative changes of the parameters
RANGE_OBJ = 1.0
STEP_OBJ = 0.1
RANGE_STIG = 10.0
STEP_STIG = 1.0
UPDATE_POSITION = True
AVERAGE = 1
SETTLING_TIME =0.5
width, height = eiger.getImageSize()
#ROI = Rectangle(width/3, height/3, width/3, height/3,)
#ROI = Rectangle(0, 0, width, height,)
ROI = Rectangle(200,100,256,256)#(x0,y0,delta_x(2**n), delta_y(2**n))
ROI = Rectangle(130,74,256,256)
initial_state = objective.read(),obj_stig_a.read(),obj_stig_b.read()
print "Initial state:" , initial_state
def apply_pos(pos):
objective.write(pos[0])
obj_stig_a.write(pos[1])
obj_stig_b.write(pos[2])
def show_roi():
global ROI
pn=show_panel(image)
ov=Overlays.Rect(Pen(Color.BLUE), Point(ROI.x,ROI.y),Dimension(ROI.width,ROI.height))
pn.clearOverlays()
ov.setMovable(True)
pn.addOverlay(ov)
show_roi()
#r=scan_focus(objective, RANGE_OBJ, STEP_OBJ, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
r=scan_focus(obj_stig_a, RANGE_STIG, STEP_STIG, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
#r=scan_focus(obj_stig_b, RANGE_STIG, STEP_STIG, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
#r=scan_focus(objective, RANGE_OBJ, STEP_OBJ, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
#r=scan_focus(obj_stig_a, RANGE_STIG, STEP_STIG, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
#r=scan_focus(obj_stig_b, RANGE_STIG, STEP_STIG, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
#r=scan_focus(objective, RANGE_OBJ, STEP_OBJ, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)#
final_state = objective.read(),obj_stig_a.read(),obj_stig_b.read()
print "Final state:" , final_state
script/templates/AutoFocus.py
Executable → Regular
+43 -22
View File
@@ -1,28 +1,49 @@
RANGE_OBJ = 4.0
STEP_OBJ = 0.2
RANGE_STIG = 20.0
STEP_STIG = 2.0
UPDATE_POSITION = True
AVERAGE = 1
width, height = eiger.getImageSize()
ROI = Rectangle(width/3, height/3, width/3, height/3,)
if (get_exec_pars().source == CommandSource.ui) and (get_exec_pars().script == "AutoFocus") :
SCAN_TYPE = "all"
RANGE_OBJ = 2.0
STEP_OBJ = 0.2
RANGE_STIG = 20.0
STEP_STIG = 2.0
UPDATE_POSITION = True
AVERAGE = 1
RUNS = 1
width, height = eiger.getImageSize()
RENDERER = None
ROI = Rectangle(width/3, height/3, width/3, height/3,)
EXPOSURE = None
print "Auto Focus: ", SCAN_TYPE, RANGE_OBJ, STEP_OBJ, RANGE_STIG , STEP_STIG, UPDATE_POSITION, AVERAGE, RUNS, ROI, EXPOSURE
initial_state = objective.read(),obj_stig_a.read(),obj_stig_b.read()
print "Initial state:" , initial_state
set_focus_scan_roi(ROI, RENDERER)
def apply_pos(pos):
objective.write(pos[0])
obj_stig_a.write(pos[1])
obj_stig_b.write(pos[2])
r=scan_focus(objective, RANGE_OBJ, STEP_OBJ, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
r=scan_focus(obj_stig_a, RANGE_STIG, STEP_STIG, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
r=scan_focus(obj_stig_b, RANGE_STIG, STEP_STIG, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
r=scan_focus(objective, RANGE_OBJ, STEP_OBJ, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
r=scan_focus(obj_stig_a, RANGE_STIG, STEP_STIG, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
r=scan_focus(obj_stig_b, RANGE_STIG, STEP_STIG, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
r=scan_focus(objective, RANGE_OBJ, STEP_OBJ, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
former_exposure = None
try:
if EXPOSURE:
former_exposure = eiger.getExposure()
if former_exposure!=EXPOSURE:
set_exposure_time(EXPOSURE)
grab_frame(image, None, True) #Update reference image if changing exposure
for run_no in range(RUNS):
if SCAN_TYPE in ("all", "obj"):
#print "Scan obj"
r=scan_focus(objective, RANGE_OBJ, STEP_OBJ, average = AVERAGE, update_position = UPDATE_POSITION)
if SCAN_TYPE in ("all", "stiga"):
#print "Scan stig a"
r=scan_focus(obj_stig_a, RANGE_STIG, STEP_STIG, average = AVERAGE, update_position = UPDATE_POSITION)
if SCAN_TYPE in ("all", "stigb"):
#print "Scan stig b"
r=scan_focus(obj_stig_b, RANGE_STIG, STEP_STIG, average = AVERAGE, update_position = UPDATE_POSITION)
if SCAN_TYPE in ("all"):
#print "Scan obj"
r=scan_focus(objective, RANGE_OBJ, STEP_OBJ, average = AVERAGE, update_position = UPDATE_POSITION)
finally:
if EXPOSURE:
if (former_exposure is not None) and (former_exposure!=EXPOSURE):
set_exposure_time(former_exposure)
restore_eiger()
final_state = objective.read(),obj_stig_a.read(),obj_stig_b.read()
print "Final state:" , final_state
script/templates/Eiger2Img.py
Executable → Regular
+35 -4
View File
@@ -18,6 +18,7 @@ print "Starting 2Img: ", METHOD, SWITCHING, SEQUENCE , MEASUREMENTS, AUTO_SAVE,
#SEQUENCE = "B": C+,C-,C+,C-,C+,-;C+,C-.
SHOW_IMAGES = True
SAVE_DIAGS = True
CORRECT_DRIFTS = False
ID = get_setting("ID")
@@ -84,8 +85,21 @@ def imageinfo(info):
pass
def save_image_file(frame, cycle=-1, frame_index=0):
if frame is None:
raise Exception("Cannot save frame - None: cycle: " + str(cycle) + " index: " + str(frame_index))
if SHOW_IMAGES:
if SHOW_IMAGES:
plot_name = get_image_file_name(cycle, frame_index, True)
plot_data = frame.matrix if (type(frame) == Data) else get_ip_array(frame)
if plot_data is None:
raise Exception("Cannot save frame - plot_data is None: cycle: " + str(cycle) + " index: " + str(frame_index))
plots=plot(plot_data, name = plot_name)
if (len(plots)==0):
msg = "Error creating plots - cycle: " + str(cycle) + " index: " + str(frame_index)
print msg
log(msg)
else:
p=plots[0]
p.getAxis(p.AxisId.Y).setInverted(True)
if AUTO_SAVE and (frame is not None):
filename = get_image_file_name(cycle, frame_index)
@@ -100,6 +114,12 @@ run_index = get_context().getDaySequentialNumber()
run_index = get_context().getDaySequentialNumber()
print " ---- Run index : %d" %(run_index,)
max_index=0
if CORRECT_DRIFTS:
roi = get_focus_scan_roi()
calc_roi = None if (roi is None) else Roi(roi.x,roi.y,roi.width, roi.height)
calc_roi=Roi(0,0,512,512)
ref_image = None # grab_frame(image, None, True)
#print "Startup time: " + str(time.time() - start)
try:
@@ -119,10 +139,10 @@ try:
print "--- Grabing " + str(AVERAGE)+ " frames - cycle: " + str(cycle) + " step: " + str(i)
#s=time.time()
av = average_eiger_frames(AVERAGE, roi=None, wait_next=True)
#print "--- Time: " + str(time.time() - s)
#time.sleep(1) #added by Armin
frames.append(av)
frames.append(av)
imageinfo("I")
save_image_file(frames[i], cycle, i)
save_image_file(frames[i], cycle, i)
if METHOD == "Take_Image":
break
@@ -141,7 +161,18 @@ try:
print "Divide second frame by first"
frames.append(frames[1].copy())
frames[2].div(frames[0])
save_image_file(frames[2],cycle, 2)
save_image_file(frames[2],cycle, 2)
if CORRECT_DRIFTS and (calc_roi is not None):
if ref_image is None:
ref_image = frames[0]
print "-> Saved shift ref image"
else:
cur_image = frames[0]
xoff, yoff, error, diffphase = calculate_shift(ref_image,cur_image, calc_roi)
if (0<abs(xoff) < MAX_SHIFT) and (0<abs(yoff) < MAX_SHIFT):
print "-> Calculated shift: ", xoff, yoff, error, diffphase
else:
print "-> Error - shift too big:", xoff, yoff
# objective = getObjective()
# temp = getLEEMtemp()
script/templates/Eiger2Img_Hannes_valve_close.py
+238
View File
@@ -0,0 +1,238 @@
#If running from editor
if (get_exec_pars().source == CommandSource.ui) and (get_exec_pars().script == "Eiger2Img") :
METHOD = "Two_Pol"
SWITCHING = "Tune_Detune"
SEQUENCE = "A"
MEASUREMENTS = 4
AUTO_SAVE = True
EXPOSURE = 1.0
AVERAGE = 2.0
ENERGY_1 = 850.0
ENERGY_2= 900.0
SWITCH_POL=False
NUMBER_SCANS =1
print "Starting 2Img: ", METHOD, SWITCHING, SEQUENCE , MEASUREMENTS, AUTO_SAVE, EXPOSURE, AVERAGE, ENERGY_1, ENERGY_2, SWITCH_POL,NUMBER_SCANS
#SEQUENCE = "A": C+,C-,C-,C+,C+;C-,C-,C+,
#SEQUENCE = "B": C+,C-,C+,C-,C+,-;C+,C-.
SHOW_IMAGES = True
SAVE_DIAGS = True
CORRECT_DRIFTS = False
ID = get_setting("ID")
ENERGY = [ENERGY_1, ENERGY_2]
#POLARIZATION = [POLARIZATION_1, POLARIZATION_2]
if METHOD == "Two_Energies":
for en in [ENERGY_1, ENERGY_2]:
if en < 89.9 or en > 2000:
raise Exception("Bad energy argument")
start = time.time()
threads = []
#path = "{data}/{year}_{month}/{date}" + "/" + "{seq}%03d_" + METHOD
#set_exec_pars(path= path, format="txt", layout="table", open=True)
#data_path = get_context().setup.expandPath(path)
data_path = "{data}/{year}_{month}/{date}/{date}_{name}"
set_exec_pars(name=METHOD, path = data_path, format="txt", layout="table", open=True)
#data_path = get_exec_pars().path
#get_context().incrementFileSequentialNumber()
def get_image_file_name(cycle=-1, frame_index=0, short_name=False):
global max_index
if (METHOD == "Two_Pol") and (SEQUENCE == "A") and (frame_index<2) and ((cycle%2)==0): #Swapped
frame_index = 0 if frame_index else 1
root = "" if short_name else (data_path + "/")
#prefix = get_context().setup.expandPath("i{seq}%03d" + "_" + ("%d" % frame_index))
abs_index=run_index + frame_index
max_index= max(max_index, frame_index)
#prefix = get_context().setup.expandPath("i{date}%02d_{seq}%03d")
prefix = get_context().setup.expandPath("i{date}%02d_" + ("%03d" % (abs_index,)))
if cycle < 0:
ret = root + prefix + ".tif"
else:
ret= root + prefix + "/i{date}%02d"+ ("_%03d#%03d" % (abs_index,cycle)) + ".tif"
return get_context().setup.expandPath(ret)
"""
def getLEEM():
global startvoltage,objective, LEEMtemp
startvoltage=getStartvoltage()
objective=getObjective()
LEEMtemp=getLEEMtemp()
"""
#Initialize vartiables
if not get_dry_run() and str(get_setting("AUTO_SWITCH_VALVE")).lower() == "true":
open_vg10()
#rbkEnergy=energy_rbk.read()
if METHOD == "Two_Pol" or (SWITCH_POL and (METHOD == "Take_Image")):
init_pol_switch(SWITCHING)
def imageinfo(info):
pass
def save_image_file(frame, cycle=-1, frame_index=0):
if SHOW_IMAGES:
p=plot(frame.matrix if (type(frame) == Data) else get_ip_array(frame), name = get_image_file_name(cycle, frame_index, True))[0]
p.getAxis(p.AxisId.Y).setInverted(True)
if AUTO_SAVE and (frame is not None):
filename = get_image_file_name(cycle, frame_index)
threads.append(save_as_tiff(frame, filename, check=False, parallel=True, metadata=(get_diags() if SAVE_DIAGS else {})))
log(filename)
print filename
# log("SV:"+Format(startvoltage,"0.000")+" OB:"+Format(objective,"0.00")+" ST:"+Format(LEEMtemp,"0.0"))
init_eiger(exposure=EXPOSURE)
run_index = get_context().getDaySequentialNumber()
print " ---- Run index : %d" %(run_index,)
max_index=0
if CORRECT_DRIFTS:
roi = get_focus_scan_roi()
calc_roi = None if (roi is None) else Roi(roi.x,roi.y,roi.width, roi.height)
calc_roi=Roi(0,0,512,512)
ref_image = None # grab_frame(image, None, True)
#print "Startup time: " + str(time.time() - start)
try:
for scan in range(NUMBER_SCANS):
#Do the measurement loop
for cycle in range(1, MEASUREMENTS + 1):
frames = []
if MEASUREMENTS > 1:
log("nround = " + str(cycle) + " / " + str(MEASUREMENTS))
for i in range(2):
if i > 0:
open_vg10() #added by Hannes
time.sleep(5) #added by Hannes
if (cycle == 1) or (METHOD != "Take_Image"):
assert_status_ok()
if METHOD == "Two_Energies":
change_energy(ENERGY[i])
print "--- Grabing " + str(AVERAGE)+ " frames - cycle: " + str(cycle) + " step: " + str(i)
#s=time.time()
av = average_eiger_frames(AVERAGE, roi=None, wait_next=True)
#print "--- Time: " + str(time.time() - s)
time.sleep(1) #added by Armin
frames.append(av)
imageinfo("I")
time.sleep(1) #added by Armin
save_image_file(frames[i], cycle, i)
close_vg10() #added by Hannes
time.sleep(10) #added by Hannes should take 1 image every 10 minutes with shutter closed in between
if METHOD == "Take_Image":
break
if METHOD == "Two_Pol":
if (i==0) or (SEQUENCE == "B"):
switch_pol()
#time.sleep(1)
if (METHOD == "Two_Pol") or (METHOD == "Two_Energies"):
if (METHOD == "Two_Energies") or (SEQUENCE == "B") or ((cycle%2)==1):
print "Divide first frame by second"
frames.append(frames[0].copy())
frames[2].div(frames[1])
else:
print "Divide second frame by first"
frames.append(frames[1].copy())
frames[2].div(frames[0])
save_image_file(frames[2],cycle, 2)
if CORRECT_DRIFTS and (calc_roi is not None):
if ref_image is None:
ref_image = frames[0]
print "-> Saved shift ref image"
else:
cur_image = frames[0]
xoff, yoff, error, diffphase = calculate_shift(ref_image,cur_image, calc_roi)
if (0<abs(xoff) < MAX_SHIFT) and (0<abs(yoff) < MAX_SHIFT):
print "-> Calculated shift: ", xoff, yoff, error, diffphase
else:
print "-> Error - shift too big:", xoff, yoff
# objective = getObjective()
# temp = getLEEMtemp()
# log(0 , "Temp : " + Format(temp,"0.00") + " OB : " + Format(objective,"0.00") + " StigmaA : " + " StigmaB : " )
# Auto average and save
print "Waiting file writing threads to finish..."
for t in threads:
join(t)
if (MEASUREMENTS > 1) and (AUTO_SAVE == 1):
print "--- Averaging..."
for i in range(len(frames)):
"""
measures = []
for cycle in range(1, MEASUREMENTS + 1):
filename = get_image_file_name(cycle, i)
ip = open_image(filename)
#measures.append(Data(get_ip_array(ip)))
measures.append(ip)
#av = average_frames(measures) #Result is transposed???
av=average_ips (measures, roi=None, as_float=True)
"""
integration = None
for cycle in range(1, MEASUREMENTS + 1):
filename = get_image_file_name(cycle, i)
print "Open " , filename
ip = open_image(filename)
if integration is None:
integration = ip
else:
integration =integrate_ips ([integration, ip], as_float=True)
av=op_const(integration, "divide", float(MEASUREMENTS), in_place=True)
save_image_file(av, -1, i)
if SWITCH_POL and (METHOD == "Take_Image"):
switch_pol()
#SWITCH_POL = False
#set_exec_pars(then_success="run('templates/Eiger2Img')")
"""
get_context().incrementDaySequentialNumber()
set_exec_pars(open=False)
set_exec_pars(open=True)
for cycle in range(1, MEASUREMENTS + 1):
frames = []
if MEASUREMENTS > 1:
log("nround = " + str(cycle) + " / " + str(MEASUREMENTS))
print "--- Grabing " + str(AVERAGE)+ " frames - cycle: " + str(cycle) + " step: " + str(i)
av = average_eiger_frames(AVERAGE, roi=None, wait_next=True)
imageinfo("I")
save_image_file(av, cycle, i)
"""
#TODO: This is a workaround to handle 2-Images, should be removed
run_index = run_index + 1
if scan>0:
max_index=max_index+1
print " ---- New un index : %d" %(run_index,)
finally:
for i in range(max_index):
get_context().incrementDaySequentialNumber()
if not get_dry_run() and str(get_setting("AUTO_SWITCH_VALVE")).lower() == "true":
close_vg10()
restore_eiger()
script/templates/Eiger2Img_Original.py
+232
View File
@@ -0,0 +1,232 @@
#If running from editor
if (get_exec_pars().source == CommandSource.ui) and (get_exec_pars().script == "Eiger2Img") :
METHOD = "Two_Pol"
SWITCHING = "Tune_Detune"
SEQUENCE = "A"
MEASUREMENTS = 4
AUTO_SAVE = True
EXPOSURE = 1.0
AVERAGE = 2.0
ENERGY_1 = 850.0
ENERGY_2= 900.0
SWITCH_POL=False
NUMBER_SCANS =1
print "Starting 2Img: ", METHOD, SWITCHING, SEQUENCE , MEASUREMENTS, AUTO_SAVE, EXPOSURE, AVERAGE, ENERGY_1, ENERGY_2, SWITCH_POL,NUMBER_SCANS
#SEQUENCE = "A": C+,C-,C-,C+,C+;C-,C-,C+,
#SEQUENCE = "B": C+,C-,C+,C-,C+,-;C+,C-.
SHOW_IMAGES = True
SAVE_DIAGS = True
CORRECT_DRIFTS = False
ID = get_setting("ID")
ENERGY = [ENERGY_1, ENERGY_2]
#POLARIZATION = [POLARIZATION_1, POLARIZATION_2]
if METHOD == "Two_Energies":
for en in [ENERGY_1, ENERGY_2]:
if en < 89.9 or en > 2000:
raise Exception("Bad energy argument")
start = time.time()
threads = []
#path = "{data}/{year}_{month}/{date}" + "/" + "{seq}%03d_" + METHOD
#set_exec_pars(path= path, format="txt", layout="table", open=True)
#data_path = get_context().setup.expandPath(path)
data_path = "{data}/{year}_{month}/{date}/{date}_{name}"
set_exec_pars(name=METHOD, path = data_path, format="txt", layout="table", open=True)
#data_path = get_exec_pars().path
#get_context().incrementFileSequentialNumber()
def get_image_file_name(cycle=-1, frame_index=0, short_name=False):
global max_index
if (METHOD == "Two_Pol") and (SEQUENCE == "A") and (frame_index<2) and ((cycle%2)==0): #Swapped
frame_index = 0 if frame_index else 1
root = "" if short_name else (data_path + "/")
#prefix = get_context().setup.expandPath("i{seq}%03d" + "_" + ("%d" % frame_index))
abs_index=run_index + frame_index
max_index= max(max_index, frame_index)
#prefix = get_context().setup.expandPath("i{date}%02d_{seq}%03d")
prefix = get_context().setup.expandPath("i{date}%02d_" + ("%03d" % (abs_index,)))
if cycle < 0:
ret = root + prefix + ".tif"
else:
ret= root + prefix + "/i{date}%02d"+ ("_%03d#%03d" % (abs_index,cycle)) + ".tif"
return get_context().setup.expandPath(ret)
"""
def getLEEM():
global startvoltage,objective, LEEMtemp
startvoltage=getStartvoltage()
objective=getObjective()
LEEMtemp=getLEEMtemp()
"""
#Initialize vartiables
if not get_dry_run() and str(get_setting("AUTO_SWITCH_VALVE")).lower() == "true":
open_vg10()
#rbkEnergy=energy_rbk.read()
if METHOD == "Two_Pol" or (SWITCH_POL and (METHOD == "Take_Image")):
init_pol_switch(SWITCHING)
def imageinfo(info):
pass
def save_image_file(frame, cycle=-1, frame_index=0):
if SHOW_IMAGES:
p=plot(frame.matrix if (type(frame) == Data) else get_ip_array(frame), name = get_image_file_name(cycle, frame_index, True))[0]
p.getAxis(p.AxisId.Y).setInverted(True)
if AUTO_SAVE and (frame is not None):
filename = get_image_file_name(cycle, frame_index)
threads.append(save_as_tiff(frame, filename, check=False, parallel=True, metadata=(get_diags() if SAVE_DIAGS else {})))
log(filename)
print filename
# log("SV:"+Format(startvoltage,"0.000")+" OB:"+Format(objective,"0.00")+" ST:"+Format(LEEMtemp,"0.0"))
init_eiger(exposure=EXPOSURE)
run_index = get_context().getDaySequentialNumber()
print " ---- Run index : %d" %(run_index,)
max_index=0
if CORRECT_DRIFTS:
roi = get_focus_scan_roi()
calc_roi = None if (roi is None) else Roi(roi.x,roi.y,roi.width, roi.height)
calc_roi=Roi(0,0,512,512)
ref_image = None # grab_frame(image, None, True)
#print "Startup time: " + str(time.time() - start)
try:
for scan in range(NUMBER_SCANS):
#Do the measurement loop
for cycle in range(1, MEASUREMENTS + 1):
frames = []
if MEASUREMENTS > 1:
log("nround = " + str(cycle) + " / " + str(MEASUREMENTS))
for i in range(2):
if (cycle == 1) or (METHOD != "Take_Image"):
assert_status_ok()
if METHOD == "Two_Energies":
change_energy(ENERGY[i])
print "--- Grabing " + str(AVERAGE)+ " frames - cycle: " + str(cycle) + " step: " + str(i)
#s=time.time()
av = average_eiger_frames(AVERAGE, roi=None, wait_next=True)
#print "--- Time: " + str(time.time() - s)
time.sleep(1) #added by Armin
frames.append(av)
imageinfo("I")
time.sleep(1) #added by Armin
save_image_file(frames[i], cycle, i)
if METHOD == "Take_Image":
break
if METHOD == "Two_Pol":
if (i==0) or (SEQUENCE == "B"):
switch_pol()
#time.sleep(1)
if (METHOD == "Two_Pol") or (METHOD == "Two_Energies"):
if (METHOD == "Two_Energies") or (SEQUENCE == "B") or ((cycle%2)==1):
print "Divide first frame by second"
frames.append(frames[0].copy())
frames[2].div(frames[1])
else:
print "Divide second frame by first"
frames.append(frames[1].copy())
frames[2].div(frames[0])
save_image_file(frames[2],cycle, 2)
if CORRECT_DRIFTS and (calc_roi is not None):
if ref_image is None:
ref_image = frames[0]
print "-> Saved shift ref image"
else:
cur_image = frames[0]
xoff, yoff, error, diffphase = calculate_shift(ref_image,cur_image, calc_roi)
if (0<abs(xoff) < MAX_SHIFT) and (0<abs(yoff) < MAX_SHIFT):
print "-> Calculated shift: ", xoff, yoff, error, diffphase
else:
print "-> Error - shift too big:", xoff, yoff
# objective = getObjective()
# temp = getLEEMtemp()
# log(0 , "Temp : " + Format(temp,"0.00") + " OB : " + Format(objective,"0.00") + " StigmaA : " + " StigmaB : " )
# Auto average and save
print "Waiting file writing threads to finish..."
for t in threads:
join(t)
if (MEASUREMENTS > 1) and (AUTO_SAVE == 1):
print "--- Averaging..."
for i in range(len(frames)):
"""
measures = []
for cycle in range(1, MEASUREMENTS + 1):
filename = get_image_file_name(cycle, i)
ip = open_image(filename)
#measures.append(Data(get_ip_array(ip)))
measures.append(ip)
#av = average_frames(measures) #Result is transposed???
av=average_ips (measures, roi=None, as_float=True)
"""
integration = None
for cycle in range(1, MEASUREMENTS + 1):
filename = get_image_file_name(cycle, i)
print "Open " , filename
ip = open_image(filename)
if integration is None:
integration = ip
else:
integration =integrate_ips ([integration, ip], as_float=True)
av=op_const(integration, "divide", float(MEASUREMENTS), in_place=True)
save_image_file(av, -1, i)
if SWITCH_POL and (METHOD == "Take_Image"):
switch_pol()
#SWITCH_POL = False
#set_exec_pars(then_success="run('templates/Eiger2Img')")
"""
get_context().incrementDaySequentialNumber()
set_exec_pars(open=False)
set_exec_pars(open=True)
for cycle in range(1, MEASUREMENTS + 1):
frames = []
if MEASUREMENTS > 1:
log("nround = " + str(cycle) + " / " + str(MEASUREMENTS))
print "--- Grabing " + str(AVERAGE)+ " frames - cycle: " + str(cycle) + " step: " + str(i)
av = average_eiger_frames(AVERAGE, roi=None, wait_next=True)
imageinfo("I")
save_image_file(av, cycle, i)
"""
#TODO: This is a workaround to handle 2-Images, should be removed
run_index = run_index + 1
if scan>0:
max_index=max_index+1
print " ---- New un index : %d" %(run_index,)
finally:
for i in range(max_index):
get_context().incrementDaySequentialNumber()
if not get_dry_run() and str(get_setting("AUTO_SWITCH_VALVE")).lower() == "true":
close_vg10()
restore_eiger()
script/templates/FocusScan.py
Executable → Regular
+33 -18
View File
@@ -1,6 +1,6 @@
SETTLING_TIME =0.5
MAX_CONTRAST = 10e14
MAX_SHIFT = 100
MAX_SHIFT = 300
import java.awt.Rectangle as Rectangle
@@ -30,26 +30,36 @@ def apply_focus_scan_pos(pos):
obj_stig_b.write(pos[2])
fucus_scan_roi=None
focus_scan_roi=None
focus_scan_renderer=None
def show_focus_scan_roi():
global fucus_scan_roi
pn=show_panel(image)
ov=Overlays.Rect(Pen(Color.BLUE), Point(fucus_scan_roi.x,fucus_scan_roi.y),Dimension(fucus_scan_roi.width,fucus_scan_roi.height))
pn.clearOverlays()
#ov.setMovable(True)
pn.addOverlay(ov)
global focus_scan_roi, focus_scan_renderer
if focus_scan_renderer is None:
pn=show_panel(image)
ov=Overlays.Rect(Pen(Color.BLUE), Point(focus_scan_roi.x,focus_scan_roi.y),Dimension(focus_scan_roi.width,focus_scan_roi.height))
pn.clearOverlays()
#ov.setMovable(True)
pn.addOverlay(ov)
else:
pn = focus_scan_renderer
if len(pn.overlays)==0:
pn.addOverlay(Overlays.Rect(pn.getPenProfile()))
pn.overlays[0].setMovable(True)
ov=pn.overlays[0]
ov.update(Point(focus_scan_roi.x,focus_scan_roi.y),Dimension(focus_scan_roi.width,focus_scan_roi.height))
pn.refresh()
def set_focus_scan_roi(roi):
global fucus_scan_roi
fucus_scan_roi = roi
def set_focus_scan_roi(roi, renderer=None):
global focus_scan_roi, focus_scan_renderer
focus_scan_renderer = renderer
focus_scan_roi = roi
show_focus_scan_roi()
def get_focus_scan_roi():
return fucus_scan_roi
return focus_scan_roi
"""
def scan_focus(positioner, pos_range, pos_step, roi = None, average = 1, update_position = True, update_roi = True)):
def scan_contrast(positioner, pos_range, pos_step, roi = None, average = 1, update_position = True):
def after_read(rec):
if rec[positioner] > MAX_CONTRAST:
print "Invalid contrast value"
@@ -60,6 +70,9 @@ def scan_focus(positioner, pos_range, pos_step, roi = None, average = 1, update_
print "Waiting to reach scan init pos"
time.sleep(1.0)
cur = positioner.read()
if (cur < positioner.minValue+pos_range) or (cur > positioner.maxValue-pos_range):
raise Exception("Cannot perform contrast scan: " + positioner.name + " too close to limit")
if roi is None:
sensor = image_contrast
@@ -89,7 +102,8 @@ def scan_focus(positioner, pos_range, pos_step, roi = None, average = 1, update_
print "Invalid fit for ", positioner.name, mn, range_scan
time.sleep(1.0) # Wait restoring positions
return r
"""
def update_roi_pos(cur_data, former_data):
roi=get_focus_scan_roi()
calc_roi = Roi(roi.x,roi.y,roi.width, roi.height)
@@ -101,10 +115,10 @@ def update_roi_pos(cur_data, former_data):
print "Updating ROI location to ", x, y
x,y=max(x,0), max(y,0)
x,y=min(x,cur_data.width-roi.width), min(y,cur_data.height-roi.height)
ROI.setLocation(x,y)
roi.setLocation(x,y)
show_focus_scan_roi()
else:
print "Error - sshift too big: xoff, yoff"
print "Error - shift too big: xoff, yoff"
except:
print "Error calculating shift: " + str(sys.exc_info()[1])
@@ -168,9 +182,10 @@ def scan_focus(positioner, pos_range, pos_step, average = 1, update_position = T
#time.sleep(1.0) # Wait restoring positions
#print "Updating position: ", positioner.name, mn
#show_message("Setting mx pos", blocking = True)
#time.sleep(3.0)
former_data = image.data
positioner.write(mn)
time.sleep(eiger.exposure+SETTLING_TIME)
time.sleep(eiger.exposure+SETTLING_TIME)
#show_message("Updating ROI", blocking = True)
update_roi_pos(image.data, former_data)
else:
script/test/FESlitCalib.py
-21
View File
@@ -1,21 +0,0 @@
#seting parameters
caput('X11MA-KEI10:RANGE', 6) # 6 --> 200 nA
fe_slit_H_size.move(1.0)
fe_slit_V_size.move(1.0)
#scan SizeH
SlitCalib(Slit=fe_slit_H_size, Slit_offset=fe_slit_H_size_offs, detector = keithley_1a, start=1.0, end=-0.5, step_size=0.03, final_pos=1.0)
time.sleep(1)
#scan SizeV
SlitCalib(Slit=fe_slit_V_size, Slit_offset=fe_slit_V_size_offs, detector = keithley_1a, start=1.0, end=-0.5, step_size=0.03, final_pos=1.0)
ctrH=fe_slit_H_ctr.getPosition()
wdthH=2.6
ctrV=fe_slit_V_ctr.getPosition()
wdthV=1.3
#scan CenterH
SlitCalib(Slit=fe_slit_H_ctr, Slit_offset=fe_slit_H_ctr, detector = Keithley_1_raw, start=ctrH - wdthH/2, end=ctrH + wdth/2, step_size=0.1, ctrH - wdth/2)
#resetting parameters
caput ('X11MA-FE-DSAPER', 0) # 0--> closed
caput('X11MA-KEI10:RANGE', 0) # 0--> AUTO
script/test/OutlierFix.py
+15
View File
@@ -0,0 +1,15 @@
def integrate_roi(source, x,y, w, h):
if source.data is None:
source.update()
rect = Rectangle(x,y, w, h)
roi = source.data.getRoi(rect)
outliers_mask = get_outliers_mask()
if outliers_mask is not None:
mask = outliers_mask.getRoi(rect)
roi.mult(mask)
outliers_threshold = get_outliers_threshold()
if outliers_threshold>0:
roi.threshold(outliers_threshold, False, 0.0)
script/test/TestFilter.py
+33
View File
@@ -0,0 +1,33 @@
class PreProcImage(Filter):
def __init__(self):
Filter.__init__(self, "preproc_image")
self.roi=None
self.outliers_threshold=None
self.outliers_mask =None
def processData(self, data):
outliers_threshold = get_outliers_threshold() if (self.outliers_threshold is None) else self.outliers_threshold
outliers_mask = get_outliers_mask() if (self.outliers_mask is None) else self.outliers_mask
roi = self.roi
data=data.copy()
if roi is not None:
data = data.getRoi(Rectangle(roi[0], roi[1], roi[2], roi[3]))
#ret = load_image(img)
if outliers_mask is not None:
data.mult(outliers_mask)
if outliers_threshold>0:
data.threshold(outliers_threshold, False, None)
#chrono_grab = Chrono()
return data
def process(self, image, data):
return None #Does not generate BufferedImage here
image.removeAllListeners()
preproc_image=PreProcImage()
image.addListener(preproc_image)
add_device(preproc_image, True)
image.refresh()
script/test/test_3rd_ahrm.py
+4
View File
@@ -0,0 +1,4 @@
caput('X11MA-ID2:HARMONIC', 3)
time.sleep(15)
caput('X11MA-ID2:HARMONIC', 1)
#time.sleep(10)
script/test/test_exposure.py
+20
View File
@@ -0,0 +1,20 @@
EXPOSURE=1.0
for i in range(100):
former_exposure = eiger.getExposure()
if former_exposure !=0.2:
raise Exception("Bad exposure")
set_exposure_time(EXPOSURE)
grab_frame(image, None, True) #Update reference image if changing exposure
time.sleep(1.0)
if former_exposure!=EXPOSURE:
set_exposure_time(former_exposure)
restore_eiger()
if (i%3)==0:
eiger.stop()
time.sleep(1.0)
print"Stop"
script/test_speed.py
+1
View File
@@ -0,0 +1 @@
otf2(start=680, end=900, time=1, delay=1, mode='LINEAR', alpha = 0.0, offset=-1.2, name='AS31_Survey')
script/unknown
+19
View File
@@ -0,0 +1,19 @@
source=image
samples=10
roi=None
wait_next=False
sleep=0
outliers_threshold=None
outliers_mask=None
retries=None
timeout=None
frames = []
for i in range(samples):
if (i>0) and (sleep>0):
time.sleep(sleep)
aux = grab_frame(source, roi, wait_next, outliers_threshold, outliers_mask, retries, timeout)
frames.append(aux)
ret=average_frames(frames) if samples > 1 else frames[0]