48 lines
1.6 KiB
Python
48 lines
1.6 KiB
Python
###################################################################################################
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# Example of using ImageJ functionalities through ijutils.
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###################################################################################################
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from ijutils import *
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import java.awt.Color as Color
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import ch.psi.pshell.imaging.Filter as Filter
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from ch.psi.pshell.imaging.Overlays import *
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import ch.psi.pshell.imaging.Pen as Pen
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def detect_pucks(ip):
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aux = grayscale(ip, in_place=False)
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threshold(aux,0,50)
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binary_fill_holes(aux)
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return analyse_particles(aux, 10000,50000,
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fill_holes = False, exclude_edges = True,print_table=True,
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output_image = "outlines", minCirc = 0.4, maxCirc = 1.0)
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def detect_samples(ip):
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aux = grayscale(ip, in_place=False)
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invert(aux)
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subtract_background(aux)
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auto_threshold(aux)
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binary_open(aux)
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return analyse_particles(aux, 300,800,
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fill_holes = False, exclude_edges = True,print_table=True,
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output_image = "outlines", minCirc = 0.4
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, maxCirc = 1.0)
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class MyFilter(Filter):
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def process(self, image, data):
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ip = load_image(image)
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(results_puck,output_puck) = detect_pucks(ip)
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(results_samples,output_samples) = detect_samples(ip)
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set_lut(output_puck, outline_lut1[0], outline_lut1[1], outline_lut1[2])
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set_lut(output_samples, outline_lut2[0], outline_lut2[1], outline_lut2[2])
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op_image(ip, output_samples, "xor")
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op_image(ip, output_puck, "xor")
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return ip.getBufferedImage()
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#Setting the filter to a source
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img.setFilter(MyFilter())
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