Closedown

script/test

@@ -14,4 +14,4 @@ def detect_samples(ip):
             output_image = "outlines", minCirc = 0.9, maxCirc = 1.0)
             
 ip = load_array(img.getData().getMatrix())
-detect_sample()            
+detect_samples(ip)            

script/test.py

@@ -1,17 +1,24 @@
 from ijutils import *
 import java.awt.Color as Color
 
+            
+#ip = load_array(img.getData().getMatrix())
+#ip = load_array(img.getOutput())
+ip = load_image("{images}/test3.png", title="Image")
 
 
-def detect_samples(ip):        
-    aux = grayscale(ip, in_place=False)
-    invert(aux)
-    subtract_background(aux)
-    auto_threshold(aux)
-    binary_open(aux)
-    return analyse_particles(aux, 250,1000, 
+aux = grayscale(ip, in_place=False)
+aux.show()
+
+convolve(aux, KERNEL_SOBEL); aux.repaintWindow()
+
+invert(aux); aux.repaintWindow()
+subtract_background(aux); aux.repaintWindow()
+auto_threshold(aux); aux.repaintWindow()
+binary_open(aux); aux.repaintWindow()
+
+(table, image) = analyse_particles(aux, 250,1000, 
             fill_holes = False, exclude_edges = True,print_table=True,
             output_image = "outlines", minCirc = 0.9, maxCirc = 1.0)
-            
-ip = load_array(img.getData().getMatrix())
-detect_samples(ip)            
+
+image.show()