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Script execution

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gobbo_a
2019-10-30 14:09:01 +01:00
parent 791739cc6a
commit 9782e37eef
1 changed files with 26 additions and 10 deletions
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36
script/utils.py
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@@ -1,20 +1,23 @@
from ijutils import *
from ch.psi.pshell.imaging.Overlays import *
from ch.psi.pshell.imaging.Utils import *
import ch.psi.pshell.imaging.Pen as Pen
import java.awt.Rectangle as Rectangle
import ch.psi.pshell.imaging.Data as Data
def integrate(ips, roi=None):
def integrate(ips, roi=None, as_float=True):
aux = None
for i in range(len(ips)):
if i==0:
aux = new_image(ips[i].width, ips[i].height, image_type="float", title = "sum", fill_color = None)
op_image(aux, ips[i], "add", float_result=True, in_place=True)
img_type = "float" if as_float else "short"
aux = new_image(ips[i].width, ips[i].height, image_type=img_type, title = "sum", fill_color = None)
op_image(aux, ips[i], "add", float_result=as_float, in_place=True)
return aux
def average (ips):
aux = integrate(ips)
op_const(aux, "divide", len(ips), in_place=True)
def average (ips, roi=None, as_float=True):
aux = integrate(ips, roi, as_float)
op_const(aux, "divide", float(len(ips)), in_place=True)
return aux
def grab_frames(source, samples):
@@ -24,14 +27,27 @@ def grab_frames(source, samples):
frames.append(aux)
return frames
def average_frames(source, samples = 1):
return average(grab_frames(source, samples))
def average_frames(source, samples = 1, roi=None, as_float=True):
return average(grab_frames(source, samples), roi, as_float)
def integrate_frames(source, samples = 1):
return integrate(grab_frames(source, samples))
def integrate_frames(source, samples = 1, roi=None, as_float=True):
return integrate(grab_frames(source, samples), roi, as_float)
def get_image(source, roi=None):
ret = load_image(Utils.grayscale(source.output, Rectangle(roi[0], roi[1], roi[2], roi[3]) if (roi is not None) else None))
return ret
def get_image_array(ip):
if type(av.getProcessor()) == ij.process.FloatProcessor:
return ip.getProcessor().getFloatArray()
else:
return ip.getProcessor().getIntArray()
ret = grab_frames(image, 10)
av = integrate(ret, None, False)
print type(av.getProcessor())
#db=av.getBufferedImage().getData().getDataBuffer()
data = get_image_array(av)
plot(data)
data