preprocessing functions for Scienta detector images. More...

#include "mm-fitfuncs"

Namespaces
	PearlScientaPreprocess
	preprocessing functions for Scienta detector images.

Functions
variable	prompt_int_linbg_reduction (string *param)

string	capture_int_linbg_cursors ()

string	csr_int_linbg_reduction (string win)

variable	test_int_linbg (wave image)

threadsafe variable	int_linbg_reduction (wave source, wave dest1, wave dest2, string *param)

variable	test_shockley_anglefit (wave image, variable branch)

variable	prompt_Shockley_anglefit (string *param)

threadsafe variable	Shockley_anglefit (wave source, wave dest1, wave dest2, string *param)

variable	prompt_int_quadbg_reduction (string *param)

variable	test_int_quadbg (wave image)

threadsafe variable	int_quadbg_reduction (wave source, wave dest1, wave dest2, string *param)

variable	scienta_norm (wave w, variable x)

wave	fit_scienta_ang_transm (wave data, wave params)

threadsafe variable	scienta_ang_transm (wave w, variable x)

wave	fit_scienta_poly_bg (wave data, wave params, variable bgterms)

variable	scienta_poly_bg (wave w, variable e, variable a)

variable	prompt_redim_linbg_reduction (string *param)
	parameter dialog for the redim_linbg_reduction() function More...

threadsafe variable	redim_linbg_reduction (wave source, wave dest1, wave dest2, string *param)
	linear background reduction function for incorrectly dimensioned scienta image More...

variable	test_gauss2_reduction (wave image)
	apply the gauss2_reduction function to a single image More...

variable	prompt_gauss2_reduction (string *param)
	prompt for the gauss2_reduction parameters More...

threadsafe variable	gauss2_reduction (wave source, wave dest1, wave dest2, string *param)
	fit horizontal cuts of an image with two gaussian peaks on a linear background More...

Detailed Description

preprocessing functions for Scienta detector images.

this procedure contains functions for data reduction and instrument-specific normalization.

Author: matthias muntwiler, matth.nosp@m.ias..nosp@m.muntw.nosp@m.iler.nosp@m.@psi..nosp@m.ch

Copyright: 2013-17 Paul Scherrer Institut
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0

Definition in file pearl-scienta-preprocess.ipf.

Function Documentation

string capture_int_linbg_cursors ( )

Definition at line 66 of file pearl-scienta-preprocess.ipf.

string csr_int_linbg_reduction ( string win )

Definition at line 76 of file pearl-scienta-preprocess.ipf.

wave fit_scienta_ang_transm	(	wave	data,
		wave	params
	)

Definition at line 551 of file pearl-scienta-preprocess.ipf.

wave fit_scienta_poly_bg	(	wave	data,
		wave	params,
		variable	bgterms
	)

Definition at line 610 of file pearl-scienta-preprocess.ipf.

threadsafe variable gauss2_reduction	(	wave	source,
		wave	dest1,
		wave	dest2,
		string *	param
	)

fit horizontal cuts of an image with two gaussian peaks on a linear background

the function fits each horizontal profile (EDC) with two gaussian peaks on a linear background. the position and width of the peaks is kept fixed according to input parameters. the peak amplitude is constrained to positive value.

the width parameter is defined as in Igor's gauss curve fit function (standard deviation divided by the square root of two). the return value in dest1 is the integrated peak either of peak 1 or peak 2. dest2 returns the corresponding error estimate.

Parameters

source	source wave. two-dimensional distribution of counts. for correct weighting and error estimation it is important that the source wave contains actual counts (Poisson statistics).
dest1	(out) peak area
dest2	(out) error estimate of peak area
param	(in, out) semicolon-separated key=value list of processing parameters. this is a pass-by-reference argument. the following parameters are required. position, width and limit parameters are on the x (energy) scale. rngl low limit of fit interval rngh high limit of fit interval pos1 position of peak 1 wid1 width of peak 1 pos2 position of peak 2 wid2 width of peak 2 return select result to return, either "int1" or "int2". ybox box size of averaging in y direction, must be 1 or 3. other values lead to corrupt data.

Returns: zero if successful, non-zero if an error occurs.

Definition at line 903 of file pearl-scienta-preprocess.ipf.

threadsafe variable int_linbg_reduction	(	wave	source,
		wave	dest1,
		wave	dest2,
		string *	param
	)

Definition at line 197 of file pearl-scienta-preprocess.ipf.

threadsafe variable int_quadbg_reduction	(	wave	source,
		wave	dest1,
		wave	dest2,
		string *	param
	)

Definition at line 457 of file pearl-scienta-preprocess.ipf.

variable prompt_gauss2_reduction ( string * param )

prompt for the gauss2_reduction parameters

useful for testing or manual processing. to debug, (temporarily) remove the threadsafe attribute from the gauss2_reduction function.

Definition at line 834 of file pearl-scienta-preprocess.ipf.

variable prompt_int_linbg_reduction ( string * param )

Definition at line 36 of file pearl-scienta-preprocess.ipf.

variable prompt_int_quadbg_reduction ( string * param )

Definition at line 410 of file pearl-scienta-preprocess.ipf.

variable prompt_redim_linbg_reduction ( string * param )

parameter dialog for the redim_linbg_reduction() function

Parameters

param parameter string in a key1=value1;key2=value2;... list. the parameter string is passed by reference. see redim_linbg_reduction() for a description of parameters.

Returns: zero if the user clicked OK, non-zero if the user clicked Cancel.

Definition at line 716 of file pearl-scienta-preprocess.ipf.

variable prompt_Shockley_anglefit ( string * param )

Definition at line 322 of file pearl-scienta-preprocess.ipf.

threadsafe variable redim_linbg_reduction	(	wave	source,
		wave	dest1,
		wave	dest2,
		string *	param
	)

linear background reduction function for incorrectly dimensioned scienta image

if the energy step size does not divide the energy range to an integer number, the scienta image is exported with the wrong array size. this can be fixed by redimensioning the array.

the current implementation works in the case where dimension 0 needs to be incremented. the function may be generalized to dimension 1 and/or decrementing by additional parameters. it is not known yet whether a generalization is needed or whether it can cover all cases.

background subtraction and peak integration is the same as by the int_linbg_reduction() function.

Parameters

source	source wave Scienta detector image, energy axis along X, angle axis along Y
dest1	destination wave 1
dest2	destination wave 2 each wave is a one-dimensional intensity distribution the function may redimension these waves to one of the image dimensions (it must be clear to the user which dimension this is). the meaning of dest1 and dest2 is up to the particular function, e.g. dest1 could hold the mean value and dest2 the one-sigma error, or dest1 could hold the X-profile, and dest2 the Y-profile.
param	parameter string in a key1=value1;key2=value2;... list. the parameter string is passed by reference.

all region parameters are relative to the image size (0...1).

Lcrop size of the lower cropping region
Hcrop size of the upper cropping region
Lsize size of the lower background integration region
Hsize size of the upper background integration region
Cpos center position of the of the peak integration region
Csize size of the peak integration region

typical values (peak centered on detector, FWHM ~ 20 % of image) Lcrop=0.11;Hcrop=0.11;Lsize=0.2;Hsize=0.2;Cpos=0.5;Csize=0.2

Returns: zero if successful, non-zero if an error occurs.

Definition at line 787 of file pearl-scienta-preprocess.ipf.

threadsafe variable scienta_ang_transm	(	wave	w,
		variable	x
	)

Definition at line 578 of file pearl-scienta-preprocess.ipf.

variable scienta_norm	(	wave	w,
		variable	x
	)

Definition at line 544 of file pearl-scienta-preprocess.ipf.

variable scienta_poly_bg	(	wave	w,
		variable	e,
		variable	a
	)

Definition at line 654 of file pearl-scienta-preprocess.ipf.

threadsafe variable Shockley_anglefit	(	wave	source,
		wave	dest1,
		wave	dest2,
		string *	param
	)

Definition at line 337 of file pearl-scienta-preprocess.ipf.

variable test_gauss2_reduction ( wave image )

apply the gauss2_reduction function to a single image

useful for testing or manual processing. to debug, (temporarily) remove the threadsafe attribute from the gauss2_reduction function.

Definition at line 810 of file pearl-scienta-preprocess.ipf.

variable test_int_linbg ( wave image )

Definition at line 180 of file pearl-scienta-preprocess.ipf.

variable test_int_quadbg ( wave image )

Definition at line 440 of file pearl-scienta-preprocess.ipf.

variable test_shockley_anglefit	(	wave	image,
		variable	branch
	)

Definition at line 297 of file pearl-scienta-preprocess.ipf.

Namespaces

Functions

Detailed Description

Function Documentation