Charles Mita
e4466b00fc
This will cause XDS to segfault on exit, since the plugin (and hence HDF5 library) will likely have been unloaded. Calling "H5dont_atexit" before any other H5 calls will prevent the hook being installed, and we call "H5Close" ourselves as part of the plugin_close function.
Durin
XDS plugin for reading HDF5 files following the NeXuS format or those written by Dectris Eiger detectors.
See:
- https://www.nexusformat.org
- https://www.dectris.com/features/features-eiger-x/hdf5-and-nexus
- https://strucbio.biologie.uni-konstanz.de/xdswiki
Usage
In your XDS.INP add:
LIB=[path to durin-plugin.so]
NAME_TEMPLATE_OF_DATA_FRAMES=[data_path]/data_images_??????.h5
XDS will instruct the plugin to load [data_path]/data_images_master.h5 and this must be the
Eiger master file or the NeXus file for the data collection.
It is generally assumed that the files [data_path]/data_images_data_xxxxxx.h5 contain the actual
datasets and the master file contains HDF5 external links to these, but that is not required, so long as
the master file contains an NXdata or NXdetector group with either a dataset named data or a
series of datasets named data_000001, data_000002, etc.
Requirements
- HDF5 Library (https://www.hdfgroup.org/downloads)
Building
cd durin
make
Plugin file is build/durin-plugin.so