37 lines
1023 B
Markdown
37 lines
1023 B
Markdown
# Dynamo
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## Installation
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Installation was only partially automated in the build script. Currently only the 'prep' step is implemented. Future versions will add more commands to the build script.
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Installation should be done on merlin with an -adm account
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1. Add new version to `files/variants`
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2. Add google drive download link to `$V/config`.
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3. Run `build <version>`
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4. module load dynamo/$V
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5. `cd $DYNAMO_HOME/bin`. Further steps are taken from `README_dynamo_installation.txt`
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6. [Compile stand-alone](https://www.dynamo-em.org/w/index.php?title=Installation)
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dynamo_setup_linux.sh
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7. [Compile MPI](https://www.dynamo-em.org/w/index.php?title=MPI_Cluster):
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- With the shipped MCRLinux directory:
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source dynamo_setup_cluster.sh mpic++ dynamo_activate_linux_shipped_MCR.sh
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- With MCR from pmodules:
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source dynamo_setup_cluster.sh mpic++ dynamo_activate_MCR.sh
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8. Compile Cuda:
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cd $DYNAMO_ROOT/cuda
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make clean
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./config.sh
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grep CUDA_ROOT makefile
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make all
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make extended
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