31 lines
1.5 KiB
Plaintext
31 lines
1.5 KiB
Plaintext
#%Module1.0
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module-whatis "PEET (Particle Estimation for Electron Tomography) is an open-source package for aligning and averaging particles in 3-D subvolumes extracted from tomograms."
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module-url "https://bio3d.colorado.edu/PEET/"
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module-license "GPLv2 license"
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module-maintainer "Spencer Bliven <spencer.bliven@psi.ch>"
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module-help "
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PEET (Particle Estimation for Electron Tomography) is an open-source package
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for aligning and averaging particles in 3-D subvolumes extracted from
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tomograms. It seeks the optimal alignment of each particle against a
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reference volume through several iterations. If PEET and IMOD are both
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installed, most PEET operations are available from the eTomo graphical
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user interface in IMOD. PEET uses the parallel processing framework
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within IMOD, so that the lengthy computations can be distributed to
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multiple cores on one computer, to a set of linked workstations, or to
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a cluster. PEET is written in Matlab and a compiled version is
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distributed along with the Matlab runtime environment needed to run it.
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> Nicastro D, Schwartz C, Pierson J, Gaudette R, Porter ME and McIntosh JR
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(2006), \"The molecular architecture of axonemes revealed by cryoelectron
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tomography.\", Science. Vol. 313(5789), pp. 944-948.
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DOI:10.1126/science.1128618
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> Heumann JM, Hoenger A and Mastronarde DN (2011), \"Clustering and variance
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maps for cryo-electron tomography using wedge-masked differences.\", J Struct
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Biol. Vol. 175(3), pp. 288-299. DOI:10.1016/j.jsb.2011.05.011
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"
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setenv PARTICLE_DIR "$PREFIX"
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