Files
MX_Pmodule/EM/PEET
..
2023-08-02 13:00:50 +02:00
2022-10-12 16:20:40 +02:00
2022-10-12 16:20:40 +02:00
2022-10-12 16:20:40 +02:00

PEET

Particle Estimateion for Electron Tomography

Installation

PEET is shipped as a self-expanding installation script. Run ./build to install.

An experimental config.yaml files is included using Pmodules/1.1.10 syntax. This should probably not be used until yaml support in modbuild stabilizes.

Testing

  • calcFSC should print the version number

Build notes

Building was successful with Pmodules 1.1.8 but not 1.1.9 or 1.1.10.

Linking the binary is a bit of a pain. It requires gcc to be loaded to provide relatively recent versions of libstdc++.so.6. I didn't fine what exact version Matlab MCR expects, but 9.5.0 seemed to work. MCR is linked dynamically at runtime through LD_LIBRARY_PATH. This is not set in the modulefile as expected, but rather in wrapper scripts which source particle.cfg. Sed commands in pbuild::install update this file so that it reads the loaded modules correctly.