Spencer Bliven
5233ffd6e6
- Improves the build system to install the submission scripts in bin - Add README
43 lines
1.1 KiB
Plaintext
Executable File
43 lines
1.1 KiB
Plaintext
Executable File
#!/usr/bin/env modbuild
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pbuild::add_to_group 'MX'
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pbuild::prep() {
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:
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}
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pbuild::configure() {
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:
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}
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pbuild::compile() {
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:
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}
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pbuild::install() {
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ALPHAFOLD_HOME="$PREFIX/alphafold"
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local BRANCH
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if [[ "${#V_RELEASE}" -eq 7 ]]; then
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# Release looks like a git hash
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BRANCH="${V_RELEASE}"
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else
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BRANCH="v${V_PKG}"
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fi
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git clone --depth=1 -b "$BRANCH" https://github.com/deepmind/alphafold.git "$ALPHAFOLD_HOME" || return $?
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if ! [ -f "$ALPHAFOLD_HOME/alphafold/common/stereo_chemical_props.txt" ]; then
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wget -q -P "$ALPHAFOLD_HOME/alphafold/common/" \
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--no-check-certificate `# wget root certs are old` \
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https://git.scicore.unibas.ch/schwede/openstructure/-/raw/7102c63615b64735c4941278d92b554ec94415f8/modules/mol/alg/src/stereo_chemical_props.txt
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fi
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wget -O "$ALPHAFOLD_HOME/run_alphafold.sh" \
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https://raw.githubusercontent.com/kalininalab/alphafold_non_docker/main/run_alphafold.sh
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chmod +x "$ALPHAFOLD_HOME/run_alphafold.sh"
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cp -r "$BUILDBLOCK_DIR/bin" "$PREFIX/"
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sed -i "s/ALPHAFOLD_VERSION/$V/g" "$PREFIX/bin/"*
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}
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