28 lines
954 B
Markdown
28 lines
954 B
Markdown
# PEET
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[Particle Estimateion for Electron Tomography](https://bio3d.colorado.edu/PEET/)
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## Installation
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PEET is shipped as a self-expanding installation script. Run `./build` to
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install.
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An experimental config.yaml files is included using Pmodules/1.1.10 syntax.
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This should probably not be used until yaml support in modbuild stabilizes.
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## Testing
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- `calcFSC` should print the version number
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## Build notes
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Building was successful with Pmodules 1.1.8 but not 1.1.9 or 1.1.10.
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Linking the binary is a bit of a pain. It requires gcc to be loaded to provide
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relatively recent versions of libstdc++.so.6. I didn't fine what exact version
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Matlab MCR expects, but 9.5.0 seemed to work. MCR is linked dynamically at
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runtime through LD_LIBRARY_PATH. This is not set in the modulefile as expected,
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but rather in wrapper scripts which source particle.cfg. Sed commands in
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pbuild::install update this file so that it reads the loaded modules correctly.
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