37 lines
1021 B
Bash
Executable File
37 lines
1021 B
Bash
Executable File
#!/bin/bash
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# kernelwrapper.sh
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# This wrapper is needed to correctly have jupyter activate conda evnironments
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# including the running of the $ENV/etc/conda/activate.d hooks
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# q.v. https://github.com/Anaconda-Platform/nb_conda_kernels/issues/145
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#
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# This script must be called from the config located in an environment
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# $ENV/share/jupyter/kernels/python3/kernel.jsonshare/jupyter/kernels/python3/kernel.json
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# 2019 - Derek Feichtinger
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dbgecho() {
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DBGLOG=/tmp/kernelwrapper-${USER}.log
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if [[ $DEBUG_JUPYTER_WRAPPER == 1 ]]; then
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echo "$1" >> $DBGLOG
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fi
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}
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DATE=$(date +%Y-%m-%dT%H:%M)
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dbgecho "$DATE: $@"
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# ensure that module commands are available
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dbgecho "sourcing profile.bash"
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source /opt/psi/config/profile.bash
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dbgecho "sourcing conda.sh"
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source /opt/psi/Programming/anaconda/2019.07/conda/etc/profile.d/conda.sh &>> $DBGLOG
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dbgecho "Running activate"
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conda activate $1
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# undefine module command since it causes error in the notebook when using
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# shell escapes
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unset -f module
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shift
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exec "$@"
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