duan_jandClaude Fable 5
c3c38856b3
Main README: clone/SSH/branching quickstart with full /das paths, --tmpdir/--distdir as part of the standard build command (do not fill /var/tmp or $HOME) with cleanup for defaults, tips deduplicated against module READMEs, old-system references removed, resource links and tutorial acknowledgements added. Module READMEs: purge outdated recipes repo-wide — Pmodules/1.1.20 and 2.0.0 plus ./build replaced by modbuild/2.1.3 invocations; the cctbx unbound-variable fix moved from the main README into phenix and DIALS READMEs where it belongs. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
30 lines
945 B
Markdown
30 lines
945 B
Markdown
# DIALS
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Step 1: make sure you are in the `unx-mx_adm` group -- no -adm account needed, members can update the modules in `/opt/psi/MX` directly (if you have problems, please let the admins know)
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Step 2: load the build tool (modbuild)
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```
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module use unstable
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module load modbuild/2.1.3
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```
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Step 3: go into DIALS directory, update config.yaml to add newest release version and build module with that release name
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```
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cd DIALS
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vi files/config.yaml
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modbuild build 3.25.0
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```
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Step 4: confirm that the module loads as expected
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PS:
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Unsupported dtype issue is resolved by changing modules/dxtbx/src/dxtbx/format/FormatNXmx.py
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allowing the return of also /entry/data/data to the handle:
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https://github.com/dials/dials/issues/3033
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If loading the module fails with an `unbound variable` from the sourced
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`dials_env.sh` (cctbx-style env script), add `puts stdout "set +x nounset"`
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before the `source` line in the modulefile — same fix as phenix.
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