98daea70bd
Add new MotionCor2 variants
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Also standardize the MotionCor2 wrapper so that it's the same for all
module versions regardless of cuda support
2022-11-10 16:23:05 +01:00
4e437aefde
Install IMOD/4.11.20
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This is the first version to use modbuild; IMOD/4.9.5 was installed
manually.
2022-11-03 13:11:32 +01:00
a09fe1e77b
Merge branch 'cryodrgn' into 'master'
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Create cryodrgn/1.1.0 pmodule
See merge request Pmodules/buildblocks!354
2022-10-19 15:11:07 +00:00
052151c0a9
Create cryodrgn pmodule
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Wraps the conda environment
2022-10-19 17:06:27 +02:00
fee9a03019
Merge branch 'peet' into 'master'
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New module: PEET
See merge request Pmodules/buildblocks!353
2022-10-12 14:22:28 +00:00
05653093ff
New module: PEET
2022-10-12 16:20:40 +02:00
db36627b60
Deprecating older relion versions
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These depended on deprecated openmpi/4.0.4_slurm, so they have to also
be deprecated.
2022-10-06 17:57:00 +02:00
667790976d
Updating relion release status
2022-10-06 17:48:45 +02:00
2eca89992b
add relion 4.0.0
2022-09-29 14:17:07 +02:00
0fa181b856
Deprecating crYOLO/1.2.3 and moving other versions to stable
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1.2.3 was based on miniconda and should be removed in the future
2022-02-16 16:45:06 +01:00
bad1541b54
Add relion/4.0-beta
2021-09-30 13:58:16 +02:00
bc2425090a
Add relion/3.1.3
2021-09-30 12:14:45 +02:00
1f1a754c5d
Fix dependency problem iun relion/3.0.8-1
2021-07-26 15:39:38 +02:00
221f141241
Relion 3.1.2 and 3.1.1-1
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3.1.1-1 is compiled against cuda-aware openmpi/4.0.5_slurm (CUDA
11.0.3), which fixes some bugs
2021-03-05 15:25:08 +01:00
782e89c578
Major Relion recompilation using newer openmpi
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- Add relion/2.1 with openmpi/4.0.4_slurm
- Add relion/3.0.8-1 with openmpi/4.0.5_slurm
- Mark 3.1.0-1 and 3.1.1 as stable
- Deprecate all older versions (betas and versions with openmpi/3.1.4
and older, which don't work with the current configuration)
2021-01-22 21:34:09 +01:00
94901de619
Fix dynamo license in modulefile
2020-12-17 17:16:41 +01:00
bc1043cc1c
Merge branch 'dynamo' into 'master'
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Initial dynamo/1.1.514 buildblock
See merge request Pmodules/buildblocks!157
2020-12-17 11:17:25 +01:00
21c3278e96
Initial dynamo/1.1.514 buildblock
2020-12-17 11:13:18 +01:00
51436c8166
Adding preallocated scripts
2020-12-11 15:28:02 +01:00
451d3db6f4
Add cisTEM modulefile
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No new versions are available
2020-12-11 15:22:36 +01:00
3d0560a0f3
Release relion 3.1.1
2020-11-18 21:09:21 +01:00
5bdf6b2952
Add Gctf buildblock
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No new versions were installed, but this documents the build process and
updates the modulefile.
2020-11-18 21:09:20 +01:00
b28e9a8a39
Add Gautomatch buildblock
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No new versions were installed, but this documents the build process and
updates the modulefile.
2020-11-18 21:09:20 +01:00
8014c16e2a
Add MotionCor2 1.3.1, 1.3.2, & 1.4.0
2020-11-18 21:09:20 +01:00
e173ae9dd1
Add relion 3.1.0-1 variant
2020-11-18 21:09:20 +01:00
Spencer Bliven
741c68da52
Mark relion/3.1.0 as stable
2020-10-22 13:24:23 +02:00
075f98cd20
Add relion 3.1.0
2020-07-16 16:13:21 +02:00
308fd1c890
CrYOLO/1.6.1 modules
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There are _cpu and _gpu flags available, which are selected based on
fancy modulefile code (Thanks Achim)
2020-07-15 16:57:12 +02:00
c022a928b2
Merge branch 'relion' into 'master'
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Add RELION environmental variables to modulefile
See merge request Pmodules/buildblocks!87
2020-03-30 15:09:58 +02:00
Spencer Bliven
51914825a3
Add RELION environmental variables to modulefile
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These set many defaults, including external tool paths and GUI
configuration options
2020-03-30 15:07:44 +02:00
Spencer Bliven
67c09995ae
Document crYOLO/1.5.6_gpu build process
2020-03-30 14:43:13 +02:00
Spencer Bliven
ab670c0ce2
Move crYOLO paths to config file
2020-02-11 14:41:04 +01:00
606f3cacaa
Add MotionCor2 build script
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Installation is highly manual. This documents the MotionCor2
installation procedure and automates shared file installation.
Adds 1.2.6 and 1.3.0 variants.
2019-12-03 17:14:37 +01:00
8190b0a6c2
Add Relion README.md
2019-10-24 16:14:33 +02:00
b5a0300933
Add relion build script.
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Builds from source based on git.
Currently only gcc/7.4.0 is used. Better performance is reported with
intel icc and MKL, but this would require additional openmpi variants.
Variants for 3.0.8 and 3.1-beta (780dd7b) are installed.
2019-10-24 16:03:36 +02:00
3153fc661b
Create crYOLO module
2019-03-12 15:39:34 +01:00
