Pre-agrees the CCP4 licence via .agree2ccp4v6 so BINARY.setup never
prompts. Download via urls: with unpacker: none (untar once into PREFIX,
BINARY.setup patches paths at final location). Build tmp and download
cache go to /das/work/p21/p21515/.cache/Pmodules through
~/.Pmodules/Pmodules.yaml (see README) since /var/tmp and the home quota
are too small for the ~5 GB tarball.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
The installed careless/0.5.4 venv already contains the NVIDIA wheels
([cuda] extra), which need only the node driver and fall back to CPU,
so a separate GPU module and cuda module dep are unnecessary. Revert
careless/build to careless[cuda] to match the actual install.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
careless installs plain careless (CPU). careless-gpu also installs plain
careless but declares cuda/12.8.1 as build_requires/runtime_deps
(jfjoch_viewer pattern) instead of pip-bundling CUDA via the [cuda] extra.
Both builds honor UV_CACHE_DIR to share one download cache.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
- main README: add Pmodules background from wiki, unx-mx_adm group
replaces -adm account for updating modules in /etc/psi/MX, and
how to propagate main to the build-* tutorial branches
- module READMEs: fix titles/paths to match module directories
(DIALS, jfjoch_viewer), replace -adm login steps with unx-mx_adm note
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Scaffold the standard 4-file Pmodule for autoPROC (Global Phasing Ltd.):
build, modulefile, files/config.yaml, README.md. The PSI licence token
(autoPROC/.licence) already existed and is installed into the software tree
at build time.
Follows the phenix archetype for the licence-gated install: the snapshot
tarball cannot be wget'd (download needs credentials), so it is staged by
hand in the module dir as autoPROC_snapshot_<date>.tar.gz and unpacked into
PREFIX with --strip-components=1 (xds pattern). Runtime is activated by
sourcing setup.sh via the modulefile.
CCP4 8.0 and XDS are wired as runtime_deps (xds from this repo; ccp4 is a
site module placeholder to confirm with `module avail ccp4`). Adds a
.gitignore guard so the proprietary snapshot is never committed.
Not built locally - to be tested on Ra.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
duan_jandClaude Fable 5
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