leonarski_fandClaude Fable 5
f422988cd2
A single per-image ice_ring_score - the strongest hexagonal-ice ring band/shoulder intensity ratio from the azimuthal profile (1 = no ice) - computed in the CPU and FPGA analysis paths and the offline azint worker, then plumbed through every layer: DataMessage/EndMessage, CBOR (frame_serialize), HDF5 (/entry/MX/iceRingScore), ScanResult, receiver plots (PlotType::IceRingScore), the OpenAPI spec (plot_type + scan_result schema, with regenerated broker/gen and frontend client) and OpenAPIConvert, the reader + Qt viewer, and the React frontend plot. Documented in docs/CBOR.md, docs/HDF5.md and docs/CPU_DATA_ANALYSIS.md, with the general "add a per-image quantity" recipe added to CLAUDE.md. Verified in HDF5: lysoC (weak ice) mean 1.23, EP_cs_01-17 (heavy ice) mean 1.67 / max 2.23. This is a monitoring quantity - it does not gate scaling (which already excludes all ice rings) or merging (handled by the CC1/2 ring mask). Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
71 lines
2.3 KiB
C++
71 lines
2.3 KiB
C++
// SPDX-FileCopyrightText: 2024 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
|
|
// SPDX-License-Identifier: GPL-3.0-only
|
|
|
|
#pragma once
|
|
|
|
#include "HDF5DataFilePlugin.h"
|
|
#include "../common/AutoIncrVector.h"
|
|
|
|
class HDF5DataFilePluginMX : public HDF5DataFilePlugin {
|
|
const size_t max_spots;
|
|
const size_t max_extra_lattices;
|
|
const bool indexing;
|
|
// spots
|
|
std::vector<float> spot_x;
|
|
std::vector<float> spot_y;
|
|
std::vector<float> spot_int;
|
|
std::vector<int8_t> spot_indexed;
|
|
std::vector<int8_t> spot_ice_ring;
|
|
std::vector<int8_t> spot_lattice;
|
|
std::vector<int32_t> spot_h;
|
|
std::vector<int32_t> spot_k;
|
|
std::vector<int32_t> spot_l;
|
|
std::vector<float> spot_dist_ewald;
|
|
|
|
AutoIncrVector<float> beam_corr_x{NAN};
|
|
AutoIncrVector<float> beam_corr_y{NAN};
|
|
|
|
AutoIncrVector<uint32_t> npeaks;
|
|
AutoIncrVector<uint32_t> strong_pixel_count;
|
|
|
|
AutoIncrVector<uint32_t> spot_count_total;
|
|
AutoIncrVector<uint32_t> spot_count_ice;
|
|
AutoIncrVector<uint32_t> spot_count_indexed;
|
|
AutoIncrVector<uint32_t> spot_count_low_res;
|
|
|
|
// indexing
|
|
AutoIncrVector<uint8_t> indexed;
|
|
AutoIncrVector<uint32_t> indexing_lattice_count;
|
|
std::vector<float> indexed_lattice;
|
|
std::vector<float> extra_lattices; // [nimages, max_extra_lattices, 9], NaN-filled
|
|
|
|
// crystal
|
|
AutoIncrVector<float> profile_radius{NAN};
|
|
AutoIncrVector<float> mosaicity_deg{NAN};
|
|
AutoIncrVector<float> b_factor{NAN};
|
|
|
|
// bkg_estimate
|
|
AutoIncrVector<float> bkg_estimate{NAN};
|
|
AutoIncrVector<float> ice_ring_score{NAN};
|
|
|
|
// resolution_estimation
|
|
AutoIncrVector<float> resolution_estimate{NAN};
|
|
|
|
AutoIncrVector<uint32_t> niggli_class;
|
|
AutoIncrVector<std::string> bravais_lattice;
|
|
|
|
AutoIncrVector<int64_t> integrated_reflections;
|
|
|
|
// scaling
|
|
bool image_scale_present = false;
|
|
AutoIncrVector<float> image_scale_factor{NAN};
|
|
AutoIncrVector<float> image_scale_cc{NAN};
|
|
AutoIncrVector<float> image_scale_mosaicity{NAN};
|
|
AutoIncrVector<float> image_scale_b_factor{NAN};
|
|
public:
|
|
explicit HDF5DataFilePluginMX(const StartMessage& msg);
|
|
void OpenFile(HDF5File &data_file, const DataMessage& msg, size_t images_per_file) override;
|
|
void Write(const DataMessage& msg, uint64_t image_number) override;
|
|
void WriteFinal(HDF5File &data_file) override;
|
|
};
|