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leonarski_fandClaude Opus 5 c4abcc2591 diagnostics: an image that was never measured reads as unknown, not as zero 
Every per-image vector the scan-result builder fills with value_or(NAN) was sized with the
value-initialised zero, so an image that never reached the fill loop at all - dropped, never
arrived, numbered outside the run - came out of the END message carrying a measurement it never
had. Zero is not missing data. A spindle blind fraction of 0.0 reads as "this frame lost
nothing", a mosaicity of 0.0 as a perfect crystal, and a resolution estimate of 0.0 as nothing
measurable at all, and each of those is a claim the run is in no position to make.

Sized with NAN instead, which is what the loop already writes when the quantity was measured and
came back empty, and what the readers and plot builders already test for. The counts keep their
zeros: a count of zero is a thing that can be true.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01EFEJG6WBQv8th4UJFNe53N
2026-09-06 22:15:20 +02:00
..
ADUHistogram.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ADUHistogram.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
AutoIncrVector.h
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
AzimuthalIntegrationMapping.cpp
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
AzimuthalIntegrationMapping.h
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
AzimuthalIntegrationProfile.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
AzimuthalIntegrationProfile.h
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
AzimuthalIntegrationSettings.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
AzimuthalIntegrationSettings.h
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
BraggIntegrationSettings.cpp
integration: the flight path between the sample and the detector is corrected for, and named
2026-09-05 17:55:43 +02:00
BraggIntegrationSettings.h
integration: the flight path between the sample and the detector is corrected for, and named
2026-09-05 17:55:43 +02:00
BrokerStatus.h
v1.0.0-rc.129 (#36)
2026-03-05 22:13:12 +01:00
CheckPath.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
CMakeLists.txt
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
ColorScale.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
ColorScale.h
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
CompressedImage.cpp
v1.0.0-rc.40
2025-05-28 18:49:27 +02:00
CompressedImage.h
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
Coord.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
Coord.h
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
CorrelationCoefficient.cpp
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
CorrelationCoefficient.h
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
CrystalLattice.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
CrystalLattice.h
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
CUDAWrapper.cpp
v1.0.0-rc.165 (#75)
2026-08-27 22:16:54 +02:00
CUDAWrapper.cu
v1.0.0-rc.165 (#75)
2026-08-27 22:16:54 +02:00
CUDAWrapper.h
v1.0.0-rc.165 (#75)
2026-08-27 22:16:54 +02:00
DarkMaskSettings.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
DarkMaskSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DatasetSettings.cpp
rugnux: a measured spot budget below the input floor degrades the run instead of killing it
2026-09-05 23:33:43 +02:00
DatasetSettings.h
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
Definitions.h
rugnux: a measured spot budget below the input floor degrades the run instead of killing it
2026-09-05 23:33:43 +02:00
DetectorGeometry.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorGeometryFixed.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
DetectorGeometryFixed.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorGeometryModular.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
DetectorGeometryModular.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorModuleGeometry.cpp
v1.0.0-rc.103 (#8)
2025-11-19 09:40:50 +01:00
DetectorModuleGeometry.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorOrientation.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
DetectorOrientation.h
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
DetectorSettings.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
DetectorSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorSetup.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
DetectorSetup.h
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
DetectorTransformation.cpp
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
DetectorTransformation.h
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
DiffractionExperiment.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
DiffractionExperiment.h
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
DiffractionGeometry.cpp
docs: the polarization factor is credited, and the sign that sets its plane is documented
2026-09-05 14:30:04 +02:00
DiffractionGeometry.h
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
DiffractionSpot.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
DiffractionSpot.h
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
FileWriterSettings.cpp
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
FileWriterSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
GitInfo.cpp.in
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
GitInfo.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
GoniometerAxis.cpp
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
GoniometerAxis.h
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
GridScanSettings.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
GridScanSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
Histogram.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
hkl_key.h
v1.0.0-rc.124 (#31)
2026-02-01 13:29:33 +01:00
ImageBuffer.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ImageBuffer.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ImageFormatSettings.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
ImageFormatSettings.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
IndexingSettings.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
IndexingSettings.h
build: the offline instruments get the CUDA device-link step too, and the spot floor says what it drives
2026-09-06 21:15:24 +02:00
InstrumentMetadata.cpp
version 1.0.0-rc.27
2024-12-02 21:17:14 +01:00
InstrumentMetadata.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
JFJochException.h
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
JFJochMath.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
JFJochMessages.h
rugnux: the mounting's cost is computed exactly from the measured group, not guessed from an angle
2026-09-04 10:59:05 +02:00
JFJochReceiverPlots.cpp
spindle: the per-image severity travels the whole data path, and absence travels with it
2026-09-04 10:59:05 +02:00
JFJochReceiverPlots.h
spindle: the per-image severity travels the whole data path, and absence travels with it
2026-09-04 10:59:05 +02:00
JfjochTCP.h
v1.0.0-rc.165 (#75)
2026-08-27 22:16:54 +02:00
Logger.cpp
v1.0.0-rc.82
2025-09-22 19:49:39 +02:00
Logger.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ModuleSummation.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
ModuleSummation.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
MovingAverage.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
MovingAverage.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
MultiLinePlot.cpp
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
MultiLinePlot.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
NetworkAddressConvert.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
NetworkAddressConvert.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ParallelFor.h
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
PixelMask.cpp
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
PixelMask.h
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
Plot.h
spindle: the per-image severity travels the whole data path, and absence travels with it
2026-09-04 10:59:05 +02:00
print_license.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
RawToConvertedGeometry.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
RawToConvertedGeometryCore.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
Reflection.h
integration: the flight path between the sample and the detector is corrected for, and named
2026-09-05 17:55:43 +02:00
ResolutionShells.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
ResolutionShells.h
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
ROIAzimuthal.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIAzimuthal.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIBox.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIBox.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROICircle.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROICircle.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIDefinition.cpp
version 1.0.0-rc.29
2024-12-08 13:26:13 +01:00
ROIDefinition.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ROIElement.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIElement.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIMap.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIMap.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ScalingSettings.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
ScalingSettings.h
v1.0.0-rc.166 (#76)
2026-09-02 21:17:31 +02:00
ScanResult.cpp
v1.0.0-rc.44
2025-06-15 17:46:46 +02:00
ScanResult.h
spindle: the per-image severity travels the whole data path, and absence travels with it
2026-09-04 10:59:05 +02:00
ScanResultGenerator.cpp
diagnostics: an image that was never measured reads as unknown, not as zero
2026-09-06 22:15:20 +02:00
ScanResultGenerator.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
SpotToSave.cpp
v1.0.0-rc.72
2025-09-08 20:28:59 +02:00
SpotToSave.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
StatusVector.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
StatusVector.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
TableChecksum.h
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
ThreadSafeFIFO.h
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
time_utc.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
TopPixels.cpp
v1.0.0-rc.121 (#28)
2025-12-12 21:24:20 +01:00
TopPixels.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
UnitCell.cpp
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
UnitCell.h
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
XrayFluorescenceSpectrum.cpp
v1.0.0-rc.81
2025-09-21 19:27:51 +02:00
XrayFluorescenceSpectrum.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ZeroCopyReturnValue.cpp
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
ZeroCopyReturnValue.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
ZMQWrappers.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
ZMQWrappers.h
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00