leonarski_fandClaude Opus 4.8
fbebc0d56e
The decay/absorption correction surfaces previously forced the CPU 3D combine (absorption needs each full's predicted detector position, which the GPU SoA did not carry), so they could not be default-on without losing the fast GPU path. Put them on the GPU: - carry px/py (peak partial) through the GPU combine and download them with the fulls (GetFullsPxPy); - add SetFullsCorr to re-upload the host-corrected corr to the resident fulls before the merge. The surfaces themselves stay as cheap host fits on the downloaded fulls; only px/py download + corr upload are added (~two O(n_fulls) transfers). Measured +2% wall-time on lyso_ref (9.7 -> 9.9 s), and the GPU-combine and CPU-combine (--dump-observations) paths give identical results. Enable by default via a single master toggle ScalingSettings:: CorrectionSurfaces (default true; decoupled from the stills-only -B, which is rejected for rotation again). Both surfaces are cross-validated, so they no-op where their systematic is absent - safe to leave on. Off-switch wired through the rugnux CLI (--no-scaling-corrections; --absorption removed) and the viewer (a "Correction surfaces" checkbox). Documented in docs/RUGNUX.md. Battery (24 rotation crystals), default-on vs --no-scaling-corrections: EcwtCQ066S +2.4 ISa, lyso_ref +0.5 (and R-free 0.194 -> 0.185, better than XDS); every other crystal within run-to-run noise; corrections skip (CV / dB-floor) wherever there is no signal. lyso_ref anomalous S/Cl peaks are already ~45% above XDS's - the ISa gap is metric convention, not data. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Jungfraujoch
Application to receive data from the PSI JUNGFRAU and EIGER detectors.
All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.