The master file's detectorSpecific/detect_ice_rings key is read back by
HDF5MetadataSource onto the experiment, so a dataset collected with ice-ring
detection on was reprocessed with exclusion forced on (dropping ~9% of
reflections, gutting low/mid-res completeness on clean crystals) and
jfjoch_process had no way to turn it off. Make --detect-ice-rings an
optional<bool> taking =on|off (bare = on, back-compatible) and apply it
after the dataset value is copied in, so an explicit CLI choice wins.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
leonarski_fandClaude Fable 5
5c9175688a