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* Rugnux: Processes serial crystallography data from XFELs - SACLA (MPCCD), PAL-XFEL and European XFEL (CXI), LCLS (XTC) and SwissFEL Alvra (JUNGFRAU with a CrystFEL module geometry) - with several files or Jungfraujoch master files merged in one run (`rugnux *_master.h5`). * Rugnux: Stills processing takes a known unit cell and space group as a starting point, finds the beam centre (and, with a cell, the detector distance) from the images, detects the saturation level in other facilities' files and refines the placement of individual detector panels. * Rugnux: The stills report gives R_split and CC1/2 from frame half-sets, comparable with CrystFEL. * jfjoch_viewer: Opens the same XFEL file formats. * Validation: A stills battery checks Rugnux against deposited structures from SACLA, PAL-XFEL, LCLS, European XFEL and SwissFEL. * Rugnux: More reliable convergence of rotation scaling, and live molecular replacement starts as soon as the model is uploaded. * jfjoch_broker: Initialize clears the previous dataset's bearer tokens, image buffer and live Rugnux status, and a slow CUDA JIT cache is reported at start. Reviewed-on: #88 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
57 lines
1.8 KiB
CMake
57 lines
1.8 KiB
CMake
ADD_LIBRARY(JFJochReader STATIC
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JFJochReader.cpp JFJochReader.h
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JFJochHDF5Reader.cpp
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JFJochHDF5Reader.h
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JFJochMultiReader.cpp
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JFJochMultiReader.h
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SweepLayout.cpp
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SweepLayout.h
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MiniCBF.cpp
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MiniCBF.h
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JFJochCBFReader.cpp
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JFJochCBFReader.h
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MarCCD.cpp
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MarCCD.h
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JFJochMarCCDReader.cpp
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JFJochMarCCDReader.h
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CrystFELGeometry.cpp
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CrystFELGeometry.h
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JFJochXFELReader.cpp
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JFJochXFELReader.h
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DetectorLayout.h
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SMV.cpp
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SMV.h
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JFJochSMVReader.cpp
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JFJochSMVReader.h
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XTC.cpp
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XTC.h
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JFJochXTCReader.cpp
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JFJochXTCReader.h
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NXmxModules.cpp
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NXmxModules.h
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HDF5ImageLocator.cpp
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JFJochStartMessageReader.cpp
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JFJochStartMessageReader.h
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JFJochImageBufferReader.cpp
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JFJochImageBufferReader.h
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HDF5ImageLocator.h
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HDF5ImageSource.cpp
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HDF5ImageSource.h
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HDF5MetadataSource.cpp
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HDF5MetadataSource.h
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JFJochReaderImage.cpp
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JFJochReaderImage.h
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JFJochReaderDataset.cpp
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JFJochReaderDataset.h
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JFJochReaderSpots.h
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)
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# NB: JFJochHttpReader (the viewer's live-broker HTTP client) lives in viewer/ and links Mbed TLS;
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# it is deliberately NOT part of this always-built library, so the broker/writer never pull in a
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# TLS stack.
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# tiff: the marCCD reader's files are ordinary uncompressed TIFFs, so libtiff - which the build
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# already fetches for JFJochPreview in every mode - reads the pixels and there is no new dependency.
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TARGET_LINK_LIBRARIES(JFJochReader JFJochImageAnalysis JFJochAPI JFJochCommon JFJochZMQ JFJochLogger
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JFJochHDF5Wrappers CBORStream2FrameSerialize tiff ZLIB::ZLIB
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${CMAKE_DL_LIBS})
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