leonarski_f
8261b7354e
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* jfjoch_broker: Optional live Rugnux analysis of DECTRIS rotation collections inside the broker, with merged data, maps and the placed model written beside the master file, the rotation lattice in the scan result, and a "Rugnux live" tab and dashboard row in the web frontend. * Rugnux: Faster processing, with molecular replacement and model validation spread over several GPUs and run on the Apple GPU on macOS. * Rugnux: The polarization stated in miniCBF and d*TREK headers is used, twinned crystals' space groups are decided more reliably, and a run that finds no lattice still reports every image. Reviewed-on: #86 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
57 lines
4.0 KiB
CMake
57 lines
4.0 KiB
CMake
ADD_LIBRARY(JFJochStructureRefinement STATIC
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ModelFFT.cpp ModelFFT.h
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ModelGrid.cpp ModelGrid.h
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ModelScaling.cpp ModelScaling.h
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MolecularReplacement.cpp MolecularReplacement.h
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$<$<BOOL:${JFJOCH_CUDA_AVAILABLE}>:MolecularReplacementGPU.cu> MolecularReplacementGPU.h
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ModelValidation.cpp ModelValidation.h
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RugnuxModel.h
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RigidBodyRefine.cpp RigidBodyRefine.h
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$<$<BOOL:${JFJOCH_CUDA_AVAILABLE}>:RigidBodyGPU.cpp>
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$<$<BOOL:${JFJOCH_CUDA_AVAILABLE}>:RigidBodyGPU.cu>
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RigidBodyGPU.h RigidBodyGPUEngine.h
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$<$<BOOL:${JFJOCH_CUDA_AVAILABLE}>:ModelDensityGPU.cu> ModelDensityGPU.h
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$<$<BOOL:${JFJOCH_CUDA_AVAILABLE}>:ModelMaskGPU.cu> ModelMaskGPU.h
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$<$<BOOL:${JFJOCH_CUDA_AVAILABLE}>:ModelStructureFactorsGPU.cpp>
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$<$<BOOL:${JFJOCH_CUDA_AVAILABLE}>:ModelStructureFactorsGPU.cu>
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ModelStructureFactorsGPU.h ModelStructureFactorsGPUEngine.h
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$<$<BOOL:${JFJOCH_CUDA_AVAILABLE}>:ModelScaleGPU.cu> ModelScaleGPU.h
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SigmaA.cpp SigmaA.h)
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# JFJochIndexing for CUDAMemHelpers.h and, under CUDA, to put cuFFT (RigidBodyGPU.cu) after these
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# objects on the link line.
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TARGET_LINK_LIBRARIES(JFJochStructureRefinement JFJochScaleMerge JFJochIndexing JFJochCommon gemmi fftw3f)
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IF (APPLE)
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# The rotation function on the Apple GPU (MolecularReplacementMetal.h). Its kernel is compiled when it is first
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# used, from source carried in the binary, as image_analysis/bragg_integration does: the .metal file copied into
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# a generated .cpp here; editing it re-runs the configure.
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FILE(READ ${CMAKE_CURRENT_SOURCE_DIR}/MolecularReplacementMetal.metal text)
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SET_PROPERTY(DIRECTORY APPEND PROPERTY CMAKE_CONFIGURE_DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/MolecularReplacementMetal.metal)
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# Written only when it changed, so a configure does not rebuild the library.
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FILE(WRITE ${CMAKE_CURRENT_BINARY_DIR}/MolecularReplacementMetalSource.cpp.tmp
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"// Generated from image_analysis/structure_refinement by its CMakeLists.txt - do not edit.\n"
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"extern const char *const mr_metal_source;\n"
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"const char *const mr_metal_source = R\"MR_METAL(\n${text})MR_METAL\";\n")
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CONFIGURE_FILE(${CMAKE_CURRENT_BINARY_DIR}/MolecularReplacementMetalSource.cpp.tmp
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${CMAKE_CURRENT_BINARY_DIR}/MolecularReplacementMetalSource.cpp COPYONLY)
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TARGET_SOURCES(JFJochStructureRefinement PRIVATE MolecularReplacementMetal.mm MolecularReplacementMetal.h
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MolecularReplacementMetal.metal ${CMAKE_CURRENT_BINARY_DIR}/MolecularReplacementMetalSource.cpp)
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SET_SOURCE_FILES_PROPERTIES(MolecularReplacementMetal.mm PROPERTIES COMPILE_OPTIONS -fobjc-arc)
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SET_SOURCE_FILES_PROPERTIES(MolecularReplacementMetal.metal PROPERTIES HEADER_FILE_ONLY ON)
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# The model density's gather (ModelDensityMetal.h), carried in the same way.
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FILE(READ ${CMAKE_CURRENT_SOURCE_DIR}/ModelDensityMetal.metal text)
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SET_PROPERTY(DIRECTORY APPEND PROPERTY CMAKE_CONFIGURE_DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/ModelDensityMetal.metal)
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FILE(WRITE ${CMAKE_CURRENT_BINARY_DIR}/ModelDensityMetalSource.cpp.tmp
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"// Generated from image_analysis/structure_refinement by its CMakeLists.txt - do not edit.\n"
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"extern const char *const model_density_metal_source;\n"
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"const char *const model_density_metal_source = R\"DENSITY_METAL(\n${text})DENSITY_METAL\";\n")
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CONFIGURE_FILE(${CMAKE_CURRENT_BINARY_DIR}/ModelDensityMetalSource.cpp.tmp
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${CMAKE_CURRENT_BINARY_DIR}/ModelDensityMetalSource.cpp COPYONLY)
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TARGET_SOURCES(JFJochStructureRefinement PRIVATE ModelDensityMetal.mm ModelDensityMetal.h
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ModelDensityMetal.metal ${CMAKE_CURRENT_BINARY_DIR}/ModelDensityMetalSource.cpp)
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SET_SOURCE_FILES_PROPERTIES(ModelDensityMetal.mm PROPERTIES COMPILE_OPTIONS -fobjc-arc)
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SET_SOURCE_FILES_PROPERTIES(ModelDensityMetal.metal PROPERTIES HEADER_FILE_ONLY ON)
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TARGET_LINK_LIBRARIES(JFJochStructureRefinement "-framework Metal" "-framework Foundation")
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ENDIF()
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