leonarski_f
afbe844b20
Build Packages / Create release (push) Successful in 17s
Build Packages / build:portable:macos-arm64:nocuda (push) Successful in 4m41s
Build Packages / HDF5 consumer tests (DIALS, XDS) (push) Successful in 20m49s
Build Packages / build:portable:windows-x86_64:nocuda (push) Successful in 13m6s
Build Packages / build:portable:windows-x86_64:cuda (push) Successful in 23m44s
Build Packages / build:rugnux:linux-aarch64:cuda (push) Successful in 7m28s
Build Packages / build:portable:linux-x86_64:nocuda (push) Successful in 11m50s
Build Packages / build:portable:linux-x86_64:cuda (push) Successful in 14m9s
Build Packages / build:jfjoch:rocky8:nocuda (push) Successful in 16m25s
Build Packages / build:jfjoch:ubuntu2204:nocuda (push) Successful in 15m42s
Build Packages / build:jfjoch:rocky9:nocuda (push) Successful in 20m50s
Build Packages / build:jfjoch:ubuntu2404:nocuda (push) Successful in 20m36s
Build Packages / build:jfjoch:rocky8:cuda-sls9 (push) Successful in 22m18s
Build Packages / build:jfjoch:rocky9:cuda-sls9 (push) Successful in 23m29s
Build Packages / Generate python client (push) Successful in 30s
Build Packages / Build documentation (push) Successful in 1m10s
Build Packages / build:jfjoch:rocky8:cuda (push) Successful in 21m38s
Build Packages / build:jfjoch:ubuntu2204:cuda (push) Successful in 17m8s
Build Packages / build:jfjoch:rocky9:cuda (push) Successful in 23m10s
Build Packages / build:jfjoch:ubuntu2404:cuda (push) Successful in 19m16s
Build Packages / Unit tests (push) Successful in 2h8m4s
Build Packages / Validation Battery (push) Successful in 40m53s
* Rugnux: Processes serial crystallography data from XFELs - SACLA (MPCCD), PAL-XFEL and European XFEL (CXI), LCLS (XTC) and SwissFEL Alvra (JUNGFRAU with a CrystFEL module geometry) - with several files or Jungfraujoch master files merged in one run (`rugnux *_master.h5`). * Rugnux: Stills processing takes a known unit cell and space group as a starting point, finds the beam centre (and, with a cell, the detector distance) from the images, detects the saturation level in other facilities' files and refines the placement of individual detector panels. * Rugnux: The stills report gives R_split and CC1/2 from frame half-sets, comparable with CrystFEL. * jfjoch_viewer: Opens the same XFEL file formats. * Validation: A stills battery checks Rugnux against deposited structures from SACLA, PAL-XFEL, LCLS, European XFEL and SwissFEL. * Rugnux: More reliable convergence of rotation scaling, and live molecular replacement starts as soon as the model is uploaded. * jfjoch_broker: Initialize clears the previous dataset's bearer tokens, image buffer and live Rugnux status, and a slow CUDA JIT cache is reported at start. Reviewed-on: #88 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
95 lines
1.7 KiB
ReStructuredText
95 lines
1.7 KiB
ReStructuredText
.. image:: jfjoch.png
|
|
:width: 256
|
|
:align: left
|
|
|
|
PSI Jungfraujoch
|
|
================
|
|
|
|
Jungfraujoch is data acquisition and on-the-fly analysis system developed by the `Paul Scherrer Institut <https://www.psi.ch>`__.
|
|
|
|
It can be currently used with PSI and DECTRIS detectors.
|
|
|
|
Its data-processing half is **rugnux** — start at :doc:`rugnux <RUGNUX>` to process a stored
|
|
dataset, and at :doc:`the broker <JFJOCH_BROKER>` to acquire one.
|
|
|
|
Jungfraujoch is distributed under the GPLv3 license.
|
|
|
|
.. toctree::
|
|
:maxdepth: 1
|
|
:caption: rugnux — data processing
|
|
|
|
RUGNUX
|
|
RUGNUX_OVERVIEW
|
|
RUGNUX_INSTALL
|
|
RUGNUX_FORMATS
|
|
RUGNUX_TUTORIAL
|
|
RUGNUX_INTEGRATION
|
|
RUGNUX_REPORT
|
|
RUGNUX_ADVANCED
|
|
RUGNUX_MODEL_AND_REFERENCE
|
|
RUGNUX_CALIBRATION
|
|
RUGNUX_BENCHMARKING
|
|
CPU_DATA_ANALYSIS
|
|
CPU_DATA_ANALYSIS_IMAGE
|
|
CPU_DATA_ANALYSIS_INDEXING
|
|
CPU_DATA_ANALYSIS_INTEGRATION
|
|
CPU_DATA_ANALYSIS_DECISIONS
|
|
GPU_DATA_ANALYSIS
|
|
|
|
.. toctree::
|
|
:maxdepth: 1
|
|
:caption: Jungfraujoch — acquisition
|
|
|
|
JFJOCH_BROKER
|
|
JFJOCH_WRITER
|
|
JFJOCH_VIEWER
|
|
SOFTWARE_INTEGRATION
|
|
TOOLS
|
|
DEPLOYMENT
|
|
DETECTORS
|
|
HARDWARE
|
|
SOFTWARE
|
|
|
|
.. toctree::
|
|
:maxdepth: 1
|
|
:caption: FPGA
|
|
|
|
FPGA
|
|
FPGA_LICENSE
|
|
FPGA_DESIGN
|
|
FPGA_NETWORK
|
|
FPGA_PCIE_DRIVER
|
|
FPGA_SETTINGS
|
|
FPGA_DATA_ANALYSIS
|
|
|
|
.. toctree::
|
|
:maxdepth: 1
|
|
:caption: Reference
|
|
|
|
DETECTOR_GEOMETRY
|
|
OPENAPI
|
|
OPENAPI_SPECS
|
|
PYTHON_CLIENT
|
|
CBOR
|
|
HDF5
|
|
IMAGE_STREAM
|
|
PIXEL_MASK
|
|
WEB_FRONTEND
|
|
TESTS
|
|
|
|
.. toctree::
|
|
:maxdepth: 1
|
|
:caption: Project
|
|
|
|
ACKNOWLEDGEMENT
|
|
EXTERNAL_TEST_DATA
|
|
EXTERNAL_TEST_DATA_STILLS
|
|
LICENSE
|
|
THIRD_PARTY_NOTICES
|
|
VERSIONING
|
|
SECURITY
|
|
RELEASE_CONTENTS
|
|
REPOSITORIES
|
|
NAMING
|
|
CHANGELOG
|