leonarski_f
afbe844b20
* Rugnux: Processes serial crystallography data from XFELs - SACLA (MPCCD), PAL-XFEL and European XFEL (CXI), LCLS (XTC) and SwissFEL Alvra (JUNGFRAU with a CrystFEL module geometry) - with several files or Jungfraujoch master files merged in one run (`rugnux *_master.h5`). * Rugnux: Stills processing takes a known unit cell and space group as a starting point, finds the beam centre (and, with a cell, the detector distance) from the images, detects the saturation level in other facilities' files and refines the placement of individual detector panels. * Rugnux: The stills report gives R_split and CC1/2 from frame half-sets, comparable with CrystFEL. * jfjoch_viewer: Opens the same XFEL file formats. * Validation: A stills battery checks Rugnux against deposited structures from SACLA, PAL-XFEL, LCLS, European XFEL and SwissFEL. * Rugnux: More reliable convergence of rotation scaling, and live molecular replacement starts as soon as the model is uploaded. * jfjoch_broker: Initialize clears the previous dataset's bearer tokens, image buffer and live Rugnux status, and a slow CUDA JIT cache is reported at start. Reviewed-on: #88 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
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PSI Jungfraujoch
Jungfraujoch is data acquisition and on-the-fly analysis system developed by the Paul Scherrer Institut.
It can be currently used with PSI and DECTRIS detectors.
Its data-processing half is rugnux — start at rugnux <RUGNUX> to
process a stored dataset, and at the broker <JFJOCH_BROKER> to acquire one.
Jungfraujoch is distributed under the GPLv3 license.
RUGNUX RUGNUX_OVERVIEW RUGNUX_INSTALL RUGNUX_FORMATS RUGNUX_TUTORIAL RUGNUX_INTEGRATION RUGNUX_REPORT RUGNUX_ADVANCED RUGNUX_MODEL_AND_REFERENCE RUGNUX_CALIBRATION RUGNUX_BENCHMARKING CPU_DATA_ANALYSIS CPU_DATA_ANALYSIS_IMAGE CPU_DATA_ANALYSIS_INDEXING CPU_DATA_ANALYSIS_INTEGRATION CPU_DATA_ANALYSIS_DECISIONS GPU_DATA_ANALYSIS
JFJOCH_BROKER JFJOCH_WRITER JFJOCH_VIEWER SOFTWARE_INTEGRATION TOOLS DEPLOYMENT DETECTORS HARDWARE SOFTWARE
FPGA FPGA_LICENSE FPGA_DESIGN FPGA_NETWORK FPGA_PCIE_DRIVER FPGA_SETTINGS FPGA_DATA_ANALYSIS
DETECTOR_GEOMETRY OPENAPI OPENAPI_SPECS PYTHON_CLIENT CBOR HDF5 IMAGE_STREAM PIXEL_MASK WEB_FRONTEND TESTS
ACKNOWLEDGEMENT EXTERNAL_TEST_DATA EXTERNAL_TEST_DATA_STILLS LICENSE THIRD_PARTY_NOTICES VERSIONING SECURITY RELEASE_CONTENTS REPOSITORIES NAMING CHANGELOG