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Jungfraujoch/broker/JFJochStateMachine.h
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leonarski_f 8261b7354e
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v1.0.0-rc.176 (#86)
* jfjoch_broker: Optional live Rugnux analysis of DECTRIS rotation collections inside the broker, with merged data, maps and the placed model written beside the master file, the rotation lattice in the scan result, and a "Rugnux live" tab and dashboard row in the web frontend.
* Rugnux: Faster processing, with molecular replacement and model validation spread over several GPUs and run on the Apple GPU on macOS.
* Rugnux: The polarization stated in miniCBF and d*TREK headers is used, twinned crystals' space groups are decided more reliably, and a run that finds no lattice still reports every image.

Reviewed-on: #86
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
2026-10-19 07:03:28 +02:00

273 lines
11 KiB
C++

// SPDX-FileCopyrightText: 2024 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
// SPDX-License-Identifier: GPL-3.0-only
#pragma once
#include <string>
#include <mutex>
#include <future>
#include <optional>
#include <exception>
#include "../common/DiffractionExperiment.h"
#include "../jungfrau/JFCalibration.h"
#include "../common/Logger.h"
#include "JFJochServices.h"
#include "../common/ROIMap.h"
#include "../common/BrokerStatus.h"
#include "BearerTokens.h"
struct DetectorListElement {
std::string description;
std::string serial_number;
std::string base_ipv4_addr;
int64_t udp_interface_count;
int64_t nmodules;
int64_t width;
int64_t height;
std::chrono::nanoseconds readout_time;
std::chrono::nanoseconds min_frame_time;
std::chrono::nanoseconds min_count_time;
DetectorType detector_type;
float pixel_size_mm;
};
struct DetectorList {
std::vector<DetectorListElement> detector;
int64_t current_id;
};
struct MeasurementStatistics {
std::string file_prefix;
std::string experiment_group;
int64_t run_number;
int64_t images_expected;
int64_t images_collected;
int64_t images_sent;
int64_t images_skipped;
std::optional<int64_t> images_written;
int64_t max_image_number_sent;
std::optional<float> collection_efficiency;
std::optional<float> compression_ratio;
bool cancelled;
std::optional<int64_t> max_receive_delay;
std::optional<float> indexing_rate;
int64_t detector_width;
int64_t detector_height;
int64_t detector_pixel_depth;
std::optional<float> bkg_estimate;
std::optional<std::pair<float, float>> beam_center_drift_pxl;
std::string unit_cell;
std::optional<float> error_pixels;
std::optional<float> saturated_pixels;
std::optional<float> roi_beam_npixel;
std::optional<float> roi_beam_sum;
};
class JFJochStateMachine {
Logger &logger;
JFJochServices &services;
std::future<void> measurement;
// assuming immutable during normal operation
std::vector<DetectorSetup> detector_setup;
std::vector<JFModuleGainCalibration> gain_calibration;
mutable std::mutex experiment_detector_settings_mutex;
mutable std::mutex experiment_azimuthal_integration_settings_mutex;
mutable std::mutex experiment_instrument_metadata_mutex;
mutable std::mutex experiment_image_format_settings_mutex;
mutable std::mutex experiment_file_writer_settings_mutex;
mutable std::mutex experiment_indexing_settings_mutex;
mutable std::mutex experiment_dark_mask_settings_mutex;
mutable std::mutex rugnux_mutex;
DiffractionExperiment experiment;
// mutex m is protecting:
mutable std::mutex m;
std::condition_variable c;
std::atomic<JFJochState> state = JFJochState::Inactive; // state should not be set directly, but through SetState function
std::atomic<bool> cancel_sequence = false;
std::unique_ptr<JFCalibration> calibration;
PixelMask pixel_mask;
int64_t current_detector_setup; // Lock only on change
std::optional<ScanResult> scan_result;
BearerTokens tokens;
// Set by MeasurementThread when a Start fails. A synchronous Start() rethrows it directly; an
// asynchronous one has already returned, so the wait functions rethrow it instead. Every entry
// point that begins new work clears it, so it is reported to every caller asking in between but
// never attributed to the operation after it.
std::exception_ptr start_exception;
mutable std::mutex calibration_statistics_mutex;
std::vector<JFCalibrationModuleStatistics> calibration_statistics;
mutable std::mutex data_processing_settings_mutex;
SpotFindingSettings data_processing_settings;
mutable std::mutex pixel_mask_statistics_mutex;
PixelMaskStatistics pixel_mask_statistics;
mutable std::mutex broker_status_mutex;
BrokerStatus broker_status;
mutable std::mutex roi_mutex;
ROIDefinition roi;
const int32_t gpu_count;
void UpdatePixelMaskStatistics(const PixelMaskStatistics &input);
// Private functions assume that lock m is acquired
void SetState(JFJochState curr_state,
const std::optional<std::string> &message = {},
BrokerStatus::MessageSeverity message_severity = BrokerStatus::MessageSeverity::Info);
void MeasurementThread();
void InitializeThread(std::unique_lock<std::mutex> ul);
bool ImportPedestalG1G2(const JFJochReceiverOutput &receiver_output, size_t gain_level, size_t storage_cell = 0);
bool ImportPedestalG0(const JFJochReceiverOutput &receiver_output);
bool IsRunning() const; // Is state Busy/Pedestal/Measure
void ResetError() noexcept;
// The calibration steps report their own outcome through SetState and return false if the
// sequence was cancelled or the data was not collected properly, so the caller does not
// overwrite that with success.
bool TakeDarkMaskInternal(std::unique_lock<std::mutex> &ul);
void CalibrateDetector(std::unique_lock<std::mutex> ul);
bool CalibrateJUNGFRAU(std::unique_lock<std::mutex> &ul);
bool TakePedestalInternalG0(std::unique_lock<std::mutex> &ul);
bool TakePedestalInternalG1(std::unique_lock<std::mutex> &ul, int32_t storage_cell = 0);
bool TakePedestalInternalG2(std::unique_lock<std::mutex> &ul, int32_t storage_cell = 0);
bool ImportDetectorSettings(const DetectorSettings& input);
void UpdateROIDefinition();
public:
JFJochStateMachine(const DiffractionExperiment& experiment,
JFJochServices &in_services,
Logger &logger,
const SpotFindingSettings &spot_finding_settings = SpotFindingSettings());
~JFJochStateMachine();
void Initialize();
void Pedestal();
void Deactivate();
// tokens: the bearer tokens that protect the new dataset's read endpoints; they replace the
// previous dataset's tokens only once the start is accepted, and an empty list lifts the
// protection.
void Start(const DatasetSettings& settings, bool async = false, std::vector<std::string> tokens = {});
// Does the Authorization header (if any) of a request entitle it to the current dataset?
bool AcceptToken(const std::optional<std::string> &authorization) const;
BrokerStatus WaitTillNotBusy(std::chrono::milliseconds timeout);
BrokerStatus WaitTillMeasurementDone();
BrokerStatus WaitTillMeasurementDone(std::chrono::milliseconds timeout);
void Trigger();
void Cancel();
void SetCalibrationStatistics(const std::vector<JFCalibrationModuleStatistics> &input);
DetectorSettings GetDetectorSettings() const;
void LoadDetectorSettings(const DetectorSettings& settings);
InstrumentMetadata GetInstrumentMetadata() const;
void LoadInstrumentMetadata(const InstrumentMetadata& settings);
FileWriterSettings GetFileWriterSettings() const;
void LoadFileWriterSettings(const FileWriterSettings& settings);
ImageFormatSettings GetImageFormatSettings() const;
void LoadImageFormatSettings(const ImageFormatSettings& settings);
void RawImageFormatSettings();
void ConvImageFormatSettings();
// return by value to ensure thread safety
std::optional<MeasurementStatistics> GetMeasurementStatistics() const;
std::vector<JFCalibrationModuleStatistics> GetCalibrationStatistics() const;
BrokerStatus GetStatus() const;
MultiLinePlot GetPlots(const PlotRequest &request) const;
void GetPlotRaw(std::vector<float> &v,PlotType type, const std::string &roi) const;
void SetSpotFindingSettings(const SpotFindingSettings& settings);
SpotFindingSettings GetSpotFindingSettings() const;
DetectorList GetDetectorsList() const;
void SelectDetector(int64_t id);
std::optional<DetectorStatus> GetDetectorStatus() const;
void SetRadialIntegrationSettings(const AzimuthalIntegrationSettings& settings);
AzimuthalIntegrationSettings GetRadialIntegrationSettings() const;
std::string GetPreviewJPEG(const PreviewImageSettings& settings, int64_t image_number) const;
std::string GetPreviewTIFF(int64_t image_number) const;
std::string GetPedestalTIFF(size_t gain_level, size_t sc) const;
void LoadInternalGeneratorImage(const void *data, size_t size, uint64_t image_number);
void LoadInternalGeneratorImageTIFF(const std::string &s, uint64_t image_number);
// Not thread safe - only for configuration in serial context
DiffractionExperiment Experiment();
// Function for debug only - UNSAFE for real operation
void DebugOnly_SetState(JFJochState state,
const std::optional<std::string> &message = {},
BrokerStatus::MessageSeverity message_severity = BrokerStatus::MessageSeverity::Info);
void SetROIDefinition(const ROIDefinition& input);
ROIDefinition GetROIDefintion() const;
std::vector<uint64_t> GetXFELPulseID() const;
std::vector<uint64_t> GetXFELEventCode() const;
std::string GetFullPixelMaskTIFF() const;
std::string GetUserPixelMaskTIFF() const;
std::vector<uint32_t> GetFullPixelMask() const;
std::vector<uint32_t> GetUserPixelMask() const;
void SetUserPixelMask(const std::vector<uint32_t> &v);
void SetUserPixelMask(const CompressedImage &image);
std::vector<DeviceStatus> GetDeviceStatus() const;
void SetPreviewSocketSettings(const ZMQPreviewSettings &input);
ZMQPreviewSettings GetPreviewSocketSettings();
void SetMetadataSocketSettings(const ZMQMetadataSettings &input);
ZMQMetadataSettings GetMetadataSocketSettings();
void SetIndexingSettings(const IndexingSettings &input);
IndexingSettings GetIndexingSettings() const;
void SetRugnuxLive(bool enable, int64_t reserved_cpus, double deadline_s);
void SetRugnuxModel(std::shared_ptr<const RugnuxModel> model, int64_t size_bytes); // null = remove the model
RugnuxLiveSettings GetRugnuxLive() const;
RugnuxLiveSnapshot GetRugnuxStatus() const;
void SetBraggIntegrationSettings(const BraggIntegrationSettings &input);
BraggIntegrationSettings GetBraggIntegrationSettings() const;
PixelMaskStatistics GetPixelMaskStatistics() const;
void GetStartMessageFromBuffer(std::vector<uint8_t> &v);
void GetImageFromBuffer(std::vector<uint8_t> &v, int64_t image_number = -1);
ImageBufferStatus GetImageBufferStatus() const;
void ClearImageBuffer() const;
void AddDetectorSetup(const DetectorSetup& setup); // Not thread safe, only during setup
std::optional<ScanResult> GetScanResult() const;
void SetDarkMaskSettings(const DarkMaskSettings& settings);
DarkMaskSettings GetDarkMaskSettings() const;
ImagePusherStatus GetImagePusherStatus() const;
};