leonarski_fandClaude Opus 4.8 e91b520863 rugnux: fix SG/cell from a reference MTZ, and reindex data into the model's enantiomorph
Two ways the processing now adopts symmetry from an external reference:

- Reference MTZ (-z) fixes the space group and unit cell, unless -S / -C override them
  (the explicit flag always wins - so -S with the "wrong" enantiomorph is allowed). The cell
  is a soft reference: indexing may still drift within tolerance, as with -C.

- rugnux --model: when the data was merged in the enantiomorph of the model's space group
  (e.g. data P4(1)2(1)2, model P4(3)2(1)2 - the merged intensities cannot tell them apart),
  ValidateAgainstModel reindexes the observed reflections into the model's hand (via gemmi
  change_of_hand_op). This keeps the data setting consistent with the model; it does not change
  the R-factors, which use |F|.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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Jungfraujoch

Application to receive data from the PSI JUNGFRAU and EIGER detectors.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.

S
Description
Jungfraujoch Data Acquisition System
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