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leonarski_fandClaude Opus 5.5 e186d6e6f1 Merge viewer-proc into rc175: viewer processing starts from a bare rugnux's defaults (shared RugnuxDefaults), unit cell unticked on open, MX jobs with rugnux's azimuthal-integration defaults, processed CBF/marCCD/SMV sweeps show their run from _process.h5; RESULT-CHANGING (owner approved): stills geometry refinement default also for a stationary axis

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

2026-10-15 16:44:27 +02:00

.gitea/workflows

Metal Bragg integration engine on macOS, output unchanged (bit-identical to the CPU engine)

2026-10-14 23:18:42 +02:00

acquisition_device

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

broker

Broker: log why a DECTRIS run ends in a detector error, reuse one SIMPLON connection

2026-10-08 22:45:42 +02:00

common

Logger: find the NVTX3 headers next to nvcc too, so the aarch64 cross build compiles

2026-10-15 14:09:49 +02:00

compression

CBF byte-offset decoder: plain stores instead of SSE streaming stores

2026-10-13 07:54:56 +02:00

detector_control

DectrisSimplonClient: separate connections for commands and status reads

2026-10-08 22:53:01 +02:00

docker

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

docs

RESULT-CHANGING: molecular replacement's transform FFT on the GPU wherever it fits the search's budget

2026-10-15 13:41:48 +02:00

etc

v1.0.0-rc.166 (#76 )

2026-09-02 21:17:31 +02:00

fpga

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

frame_serialize

v1.0.0-rc.173 (#83 )

2026-09-29 15:57:32 +02:00

frontend

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

gemmi_gph

gemmi dencalc: an atom whose density at the starting radius is exactly the cutoff gets a radius, not NaN

2026-10-13 14:28:51 +02:00

image_analysis

Merge cpu-review into rc175: CPU Bragg integration walks reflections in detector order; BraggExp and the Gaussian's cells vectorise; AnalyzeBlock pixel classification vectorises; output unchanged

2026-10-15 16:44:24 +02:00

image_puller

ZeroMQ puller: the message region without a ring takes the message's read-only bytes

2026-10-13 13:17:48 +02:00

image_pusher

ZeroMQ pusher: say so when a stalled writer switches the socket to dropping

2026-10-13 12:51:34 +02:00

include

v1.0.0-rc.133

2026-03-26 20:50:33 +01:00

jungfrau

v1.0.0-rc.153 (#63 )

2026-06-23 20:29:49 +02:00

licenses

battery.py timing: a three-set benchmark placed by molecular replacement, checked and timed per step

2026-10-15 09:01:46 +02:00

preview

Thread count from the CPUs the process may use, not the machine's

2026-10-08 11:15:29 +02:00

reader

marCCD frames are widened on the device

2026-10-12 22:37:47 +02:00

receiver

receiver: allow 30 s instead of 10 s for the image pusher to return its buffers after END

2026-10-13 19:57:15 +02:00

rugnux

RESULT-CHANGING (owner approved): stills with a stationary axis get the stills geometry refinement default

2026-10-15 16:40:17 +02:00

tests

RESULT-CHANGING (owner approved): stills with a stationary axis get the stills geometry refinement default

2026-10-15 16:40:17 +02:00

tools

battery.py timing: a three-set benchmark placed by molecular replacement, checked and timed per step

2026-10-15 09:01:46 +02:00

viewer

Viewer: a processed CBF / marCCD / SMV sweep shows its run from the _process.h5

2026-10-15 16:05:30 +02:00

writer

Writer: CloseOldFiles walks the open data files, not every file slot of the run

2026-10-13 12:51:34 +02:00

xds-plugin

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

.gitattributes

v1.0.0-rc.153 (#63 )

2026-06-23 20:29:49 +02:00

.gitignore

battery.py timing: a three-set benchmark placed by molecular replacement, checked and timed per step

2026-10-15 09:01:46 +02:00

.readthedocs.yaml

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

CLAUDE.md

rugnux -X FFT is the algorithm: cuFFT on a GPU, FFTW without one; -X cuFFT names the GPU implementation

2026-10-14 10:13:23 +02:00

CMakeLists.txt

Metal Bragg integration engine on macOS, output unchanged (bit-identical to the CPU engine)

2026-10-14 23:18:42 +02:00

CONTRIBUTING.md

version 1.0.0-rc.27

2024-12-02 21:17:14 +01:00

gen_python_client.sh

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

gitea_create_release.py

v1.0.0-rc.94

2025-10-25 22:05:47 +02:00

gitea_upload_file.py

v1.0.0-rc.156 (#66 )

2026-07-03 19:18:56 +02:00

LICENSE

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

make_doc.sh

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

README.md

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

rugnux_anomalous.py

v1.0.0.rc-162 (#72 )

2026-08-25 08:21:39 +02:00

rugnux_stills_ab.py

v1.0.0-rc.172 (#82 )

2026-09-22 06:48:37 +02:00

stills_datasets.tsv

v1.0.0-rc.164 (#74 )

2026-08-26 22:47:00 +02:00

THIRD_PARTY_NOTICES.md

battery.py timing: a three-set benchmark placed by molecular replacement, checked and timed per step

2026-10-15 09:01:46 +02:00

update_version.sh

XDS plugin: GPL linking permission, own tgz with its notices, macOS build; one portable CI build

2026-10-07 20:29:19 +02:00

VERSION

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

README.md

Jungfraujoch

Application to receive and analyse data from the PSI JUNGFRAU and EIGER detectors, together with rugnux, its program for processing stored diffraction data - rotation and serial, macromolecular and small-molecule - from images to merged reflections.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.