leonarski_f
c1c170112c
Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 11m17s
Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 13m48s
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 13m57s
Build Packages / build:rpm (rocky8_sls9) (push) Successful in 15m15s
Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 15m35s
Build Packages / build:rpm (rocky9_sls9) (push) Successful in 15m29s
Build Packages / build:rpm (ubuntu2204) (push) Successful in 10m55s
Build Packages / XDS test (durin plugin) (push) Successful in 8m17s
Build Packages / build:rpm (rocky9) (push) Successful in 12m17s
Build Packages / build:rpm (ubuntu2404) (push) Successful in 11m2s
Build Packages / Generate python client (push) Successful in 30s
Build Packages / Create release (push) Has been skipped
Build Packages / Build documentation (push) Successful in 51s
Build Packages / XDS test (JFJoch plugin) (push) Successful in 7m13s
Build Packages / DIALS test (push) Successful in 13m19s
Build Packages / XDS test (neggia plugin) (push) Successful in 5m52s
Build Packages / Unit tests (push) Successful in 1h18m25s
Build Packages / build:rpm (rocky8) (push) Successful in 7m2s
This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * jfjoch_broker: Improve logic regarding indexing architecture and thread pools (work in progress). Reviewed-on: #45
45 lines
3.1 KiB
Markdown
45 lines
3.1 KiB
Markdown
# IndexingSettings
|
|
|
|
Settings for crystallography indexing
|
|
|
|
## Properties
|
|
|
|
Name | Type | Description | Notes
|
|
------------ | ------------- | ------------- | -------------
|
|
**algorithm** | [**IndexingAlgorithm**](IndexingAlgorithm.md) | | [default to IndexingAlgorithm.FFBIDX]
|
|
**fft_max_unit_cell_a** | **float** | Largest unit cell to be indexed by FFT algorithm; parameter value affects execution time of FFT | [default to 250]
|
|
**fft_min_unit_cell_a** | **float** | Smallest unit cell to be indexed by FFT algorithm; parameter value affects execution time of FFT | [default to 10.0]
|
|
**fft_high_resolution_a** | **float** | Highest resolution of spots used for FFT algorithm; parameter value affects execution time of FFT. There is also correlation between smallest unit cell and max resolution, which need to be checked for very small systems. | [default to 2.0]
|
|
**fft_num_vectors** | **int** | Number of search directions for the FFT algorithm; parameter value affects execution time of FFT. | [default to 16384]
|
|
**tolerance** | **float** | Acceptance tolerance for spots after the indexing run - the larger the number, the more spots will be accepted |
|
|
**thread_count** | **int** | Thread count for indexing algorithm |
|
|
**geom_refinement_algorithm** | [**GeomRefinementAlgorithm**](GeomRefinementAlgorithm.md) | |
|
|
**unit_cell_dist_tolerance** | **float** | Relative distance tolerance for unit cell vs. reference; Lattices outside given tolerance will be ignored | [default to 0.05]
|
|
**viable_cell_min_spots** | **int** | Minimum number of indexed spots required for a cell to be considered viable | [default to 10]
|
|
**index_ice_rings** | **bool** | Include spots marked as ice rings in the indexing run. If `dataset_settings` doesn't have `detect_ice_rings` on, this option will have no effect on processing. | [default to False]
|
|
**rotation_indexing** | **bool** | | [default to False]
|
|
**rotation_indexing_min_angular_range_deg** | **float** | | [default to 20.0]
|
|
**rotation_indexing_angular_stride_deg** | **float** | | [default to 0.5]
|
|
**blocking** | **bool** | Indexing in Jungfraujoch goes with a dedicated thread pool. If set to false, the thread pool is non-blocking, i.e. if there are no threads available, image indexing will be skipped. This option is recommended for real-time processing at high frame rates. If set to true, the thread pool will block until a thread is available. | [default to True]
|
|
|
|
## Example
|
|
|
|
```python
|
|
from jfjoch_client.models.indexing_settings import IndexingSettings
|
|
|
|
# TODO update the JSON string below
|
|
json = "{}"
|
|
# create an instance of IndexingSettings from a JSON string
|
|
indexing_settings_instance = IndexingSettings.from_json(json)
|
|
# print the JSON string representation of the object
|
|
print(IndexingSettings.to_json())
|
|
|
|
# convert the object into a dict
|
|
indexing_settings_dict = indexing_settings_instance.to_dict()
|
|
# create an instance of IndexingSettings from a dict
|
|
indexing_settings_from_dict = IndexingSettings.from_dict(indexing_settings_dict)
|
|
```
|
|
[[Back to Model list]](../README.md#documentation-for-models) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to README]](../README.md)
|
|
|
|
|