leonarski_fandClaude Opus 4.8
db8ae0452e
Offline --scale re-scales the reflections stored in a _process.h5 without re-integration, but was broken for a self-contained integrated snapshot: 1. HDF5MetadataSource::ReadReflections fell back per-image to the linked source pixel files for every non-indexed frame (a snapshot's master holds /entry/reflections only for the sparse indexed images). With the raw _data_NNNNNN.h5 absent or not co-located this threw an HDF5 error; when present it needlessly reopened multi-GB files thousands of times. Decide once whether the master is the authoritative reflection store and, if so, never fall back - a missing per-image group just means the frame has none. Legacy/VDS acquisitions (no /entry/reflections in the master) still resolve reflections lazily to the source data files. 2. The scale-only stills branch never fit the (a,b) error model, so it merged with the identity model - far worse intensities than the full pipeline (lyso8 CC1/2 76%->21%). Fit RefineErrorModel and honour --reject-outliers, mirroring Rugnux.cpp. Round-trip validated: full merge == integrate(--no-merge) + --scale (identical error model a=0.793 b=2.287, matching unique reflection counts), and --scale now reads reflections in ~2.5s with no raw-file access. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Jungfraujoch
Application to receive data from the PSI JUNGFRAU and EIGER detectors.
All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.