leonarski_fandClaude Opus 5.5 e9da892790 Rugnux report: low warning thresholds, worded as prompts to check; ice apart from powder ...

Owner decision: a warning is a prompt to check and must catch the real cases (9min) at the
cost of some spurious ones. The physically motivated corrections stay (<|L|> outside its
physical range is not twinning; a single sweep's indexing choice; NO_LATTICE on rotation;
the no-crystal report); thresholds raised only to cut noise come back down:

- SUPERCELL_POSSIBLE warns wherever the class measures and rocks (as before rc173's audit
  fix), worded as "check the cell", naming weak ordered intensity of a correct cell and spots
  of further lattice domains as the other readings. 9min (rock 4.2%) warns again.
- LATTICE_TRANSLATION warns on every admitted vector (>=75% of the origin); below 90% the
  wording names a very strong pseudo-translation as the other reading.
- PSEUDO_TRANSLATION warns on every detection; below a 20% peak it is worded as weak, check.
- SWEEP_GAPS warns where the degraded ranges cover at least 1% of the sweep (the 4 sets of 77
  below that had 1-2 frames, 0.4-0.6% of the sweep).
- Powder rings are split between hexagonal-ice positions and the rest (MeasurePowderRings,
  report-only fields); ICE_RINGS and POWDER_RINGS warn separately from 5% of the spots, and
  ICE_RINGS also where the merge's ice gate found ice.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01D1G8gJVAy6gp1K5Dz3NE5C

2026-09-26 14:02:05 +02:00

..

crystfel

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

data

v1.0.0-rc.160 (#70)

2026-07-19 09:39:28 +02:00

test_data

v1.0.0-rc.160 (#70)

2026-07-19 09:39:28 +02:00

xds

v1.0.0-rc.134 (#43)

2026-04-09 13:30:47 +02:00

xds_durin

version 1.0.0-rc.13

2024-10-05 13:14:49 +02:00

xds_neggia

version 1.0.0-rc.13

2024-10-05 13:14:49 +02:00

AcquisitionCountersTest.cpp

v1.0.0-rc.36

2025-05-05 19:32:22 +02:00

AdaptiveSpotFinderCPUTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

AdaptiveSpotFinderGPUTest.cpp

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

AdaptiveThresholdTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

AnisotropyAnalysisTest.cpp

v1.0.0-rc.167 (#77)

2026-09-09 07:25:13 +02:00

AutoIncrVectorTest.cpp

v1.0.0-rc.139 (#49)

2026-04-29 09:50:50 +02:00

AzimuthalIntegrationTest.cpp

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

BandwidthEstimateTest.cpp

rugnux: measure the X-ray bandwidth from the pre-scan's spot shapes (reported only)

2026-09-23 20:42:46 +02:00

BeamCenterFFTGPUTest.cpp

v1.0.0-rc.169 (#79)

2026-09-15 17:09:31 +02:00

BeamCenterFFTTest.cpp

v1.0.0-rc.169 (#79)

2026-09-15 17:09:31 +02:00

BeamCenterFromBackgroundTest.cpp

v1.0.0-rc.169 (#79)

2026-09-15 17:09:31 +02:00

BeamCenterFromSpotsTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

BraggIntegrationEngineCompressedImageTest.cpp

v1.0.0-rc.167 (#77)

2026-09-09 07:25:13 +02:00

BraggIntegrationEngineGPUTest.cpp

v1.0.0-rc.167 (#77)

2026-09-09 07:25:13 +02:00

BraggStencilTest.cpp

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

BSLZ4DecoderGPUFuzzTest.cpp

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

BSLZ4DecoderGPUTest.cpp

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

CalcBraggPredictionTest.cpp

Rotation prediction: place each partial at its slice of the rocking curve

2026-09-24 14:06:24 +02:00

CalibrationTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

CBORTest.cpp

Record the corrections a DECTRIS detector applied; read multichannel NXmx

2026-09-23 21:04:16 +02:00

CCTest.cpp

v1.0.0-rc.146 (#56)

2026-05-28 18:48:35 +02:00

CheckImageOutput.h

v1.0.0-rc.36

2025-05-05 19:32:22 +02:00

CMakeLists.txt

Rugnux: spherical-harmonic crystal-frame absorption as a candidate surface

2026-09-26 13:43:59 +02:00

CoordTest.cpp

v1.0.0-rc.41

2025-06-10 18:14:04 +02:00

CrystalLatticeTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

CrystalSettingTest.cpp

Rugnux: write the standard setting, or the user's; match a reference MTZ on its own axes

2026-09-25 20:16:42 +02:00

CudaHandledErrorTest.cpp

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

CUDAMemHelpersTest.cpp

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

DetectorGeometryTest.cpp

v1.0.0-rc.103 (#8)

2025-11-19 09:40:50 +01:00

DetectorSettingsTest.cpp

v1.0.0-rc.139 (#49)

2026-04-29 09:50:50 +02:00

DetectorSetupTest.cpp

v1.0.0.rc-162 (#72)

2026-08-25 08:21:39 +02:00

DetGeomCalibTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

DiagnosticOutputTest.cpp

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

DiffractionExperimentTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

DiffractionGeometryTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

DiffractionSpotTest.cpp

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

enospc_shim.c

SHIM library improvements from the HDF Group

2026-05-08 11:39:51 +02:00

FPGAFrameGeneratorTest.cpp

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

FPGAHLSModulesTest.cpp

v1.0.0-rc.91

2025-10-20 20:43:44 +02:00

FPGAHostWriterTest.cpp

v1.0.0-rc.34

2025-04-14 11:52:06 +02:00

FPGAIntegrationTest.cpp

v1.0.0-rc.97

2025-11-09 12:42:27 +01:00

FPGANetworkTest.cpp

v1.0.0-rc.72

2025-09-08 20:28:59 +02:00

FPGAPTPTest.cpp

v1.0.0-rc.72

2025-09-08 20:28:59 +02:00

FPGASpotFindingUnitTest.cpp

v.1.0.0-rc.32

2025-03-24 12:16:33 +01:00

FrameTransformationTest.cpp

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

FrenchWilsonTest.cpp

Rugnux: French-Wilson amplitudes as ctruncate gives them

2026-09-26 13:43:59 +02:00

GoniometerAxisTest.cpp

v1.0.0-rc49

2025-06-18 15:19:18 +02:00

GridScanSettingsTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

HDF5WritingTest.cpp

v1.0.0-rc.167 (#77)

2026-09-09 07:25:13 +02:00

HistogramTest.cpp

v1.0.0-rc.121 (#28)

2025-12-12 21:24:20 +01:00

HKLKeyTest.cpp

v1.0.0-rc.124 (#31)

2026-02-01 13:29:33 +01:00

HotPixelFinderTest.cpp

rugnux: mask defective pixels measured on the pre-scan's own frames

2026-09-23 20:42:46 +02:00

ImageBufferTest.cpp

v1.0.0-rc.128 (#35)

2026-03-03 22:24:44 +01:00

ImageMetadataTest.cpp

v1.0.0-rc.103 (#8)

2025-11-19 09:40:50 +01:00

ImagePreprocessorGPUFusedTest.cpp

v1.0.0.rc-162 (#72)

2026-08-25 08:21:39 +02:00

ImageSpotFinderCPUTest.cpp

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

ImageSpotFinderGPUTest.cpp

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

IndexingUnitTest.cpp

rugnux: report-only supercell probe - the eight parity classes of the doubled cell

2026-09-25 06:02:50 +02:00

JFCalibrationTest.cpp

v1.0.0-rc.36

2025-05-05 19:32:22 +02:00

JFConversionTest.cpp

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

jfjoch_hdf5_enospc_test.cpp

v1.0.0.rc-162 (#72)

2026-08-25 08:21:39 +02:00

JFJochReaderTest.cpp

Record the corrections a DECTRIS detector applied; read multichannel NXmx

2026-09-23 21:04:16 +02:00

JFJochReceiverIntegrationTest.cpp

v1.0.0-rc.150 (#60)

2026-06-15 20:24:15 +02:00

JFJochReceiverLiteTest.cpp

pixel_mask_applied is false on the DECTRIS broker path

2026-09-23 21:17:42 +02:00

JFJochReceiverPlotsTest.cpp

v1.0.0-rc.153 (#63)

2026-06-23 20:29:49 +02:00

JFJochReceiverProcessingTest.cpp

v1.0.0-rc.160 (#70)

2026-07-19 09:39:28 +02:00

JFJochStateMachineTest.cpp

v1.0.0-rc.169 (#79)

2026-09-15 17:09:31 +02:00

JFPedestalTest.cpp

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

JPEGTest.cpp

v1.0.0-rc.40

2025-05-28 18:49:27 +02:00

LatticeReductionTest.cpp

v1.0.0-rc.153 (#63)

2026-06-23 20:29:49 +02:00

LatticeSearchTest.cpp

Rugnux: test angle promotions of the metric symmetry; score model frames at the data's best indexing

2026-09-26 13:43:58 +02:00

LePageLatticeTest.cpp

v1.0.0-rc.167 (#77)

2026-09-09 07:25:13 +02:00

LoadReferenceMtzFreeFlagsTest.cpp

v1.0.0-rc.159 (#69)

2026-07-13 13:54:03 +02:00

LoadReferenceSfCifTest.cpp

rugnux: accept a PDB structure-factor mmCIF as the -z reference

2026-09-25 20:17:03 +02:00

LossyFilterTest.cpp

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

MergeScaleTest.cpp

Merge statistics: R_meas weighted as the merge weights each observation

2026-09-25 04:52:24 +02:00

ModelScalingTest.cpp

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

ModelValidationTest.cpp

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

ModuleSummationTest.cpp

version 1.0.0-rc.27 minor fixes

2024-12-04 20:58:51 +01:00

MovingAverageTest.cpp

v1.0.0-rc.31

2025-03-02 13:15:28 +01:00

MultiLatticeSearchTest.cpp

v1.0.0-rc.148 (#58)

2026-06-08 08:30:35 +02:00

nxmx_geometry_dials_test.py

v1.0.0.rc-162 (#72)

2026-08-25 08:21:39 +02:00

ParallelForTest.cpp

v1.0.0.rc-162 (#72)

2026-08-25 08:21:39 +02:00

PedestalCalcTest.cpp

v1.0.0-rc.97

2025-11-09 12:42:27 +01:00

PixelMaskTest.cpp

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

PostRefineTest.cpp

Rugnux: report the oscillation the run integrated at; test the rotation-scale fit on a simulated sweep

2026-09-24 11:37:38 +02:00

PreflightTest.cpp

v1.0.0-rc.165 (#75)

2026-08-27 22:16:54 +02:00

PreviewCounterTest.cpp

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

RawToConvertedGeometryTest.cpp

v1.0.0-rc.97

2025-11-09 12:42:27 +01:00

RegressionTest.cpp

1.0.0-rc.89

2025-10-01 22:54:40 +02:00

ReindexAmbiguityTest.cpp

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

ResolutionShellsTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

ResultReportTest.cpp

Rugnux report: low warning thresholds, worded as prompts to check; ice apart from powder

2026-09-26 14:02:05 +02:00

RfreeFlagsTest.cpp

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

RingsFromProfileTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

ROIIntegrationCPUTest.cpp

v1.0.0-rc.153 (#63)

2026-06-23 20:29:49 +02:00

ROIIntegrationGPUTest.cpp

v1.0.0-rc.153 (#63)

2026-06-23 20:29:49 +02:00

ROIMapTest.cpp

v1.0.0-rc.153 (#63)

2026-06-23 20:29:49 +02:00

RotationIndexerTest.cpp

Make a first-pass detector tilt no mounting can have prove itself on the spots

2026-09-23 19:01:08 +02:00

RotationScaleWalkTest.cpp

Rugnux: walk the goniometer rotation scale to its fixed point, decided on the whole sweep

2026-09-24 11:34:06 +02:00

RugnuxLargeTest.cpp

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

RugnuxTest.cpp

Beam-centre check: carry both centres when only lean first passes index, decide on the merge

2026-09-24 13:44:52 +02:00

SearchSpaceGroupTest.cpp

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

SearchSpaceGroupTwinTest.cpp

v1.0.0-rc.169 (#79)

2026-09-15 17:09:31 +02:00

ShadowFinderTest.cpp

ShadowFinder: add beam-stop holder arms that let part of the beam through

2026-09-26 14:01:17 +02:00

SphericalHarmonicSurfaceTest.cpp

Rugnux: spherical-harmonic crystal-frame absorption as a candidate surface

2026-09-26 13:43:59 +02:00

SpindleBlindFractionTest.cpp

v1.0.0-rc.167 (#77)

2026-09-09 07:25:13 +02:00

SpindleCuspLossTest.cpp

v1.0.0-rc.167 (#77)

2026-09-09 07:25:13 +02:00

SpotExtractorGPUParityTest.cpp

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

SpotUtilsTest.cpp

Rugnux report: low warning thresholds, worded as prompts to check; ice apart from powder

2026-09-26 14:02:05 +02:00

StatusVectorTest.cpp

v1.0.0-rc.127 (#34)

2026-03-02 15:57:12 +01:00

StreamWriterTest.cpp

v1.0.0-rc.97

2025-11-09 12:42:27 +01:00

StrongPixelSetTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

SweepLayoutTest.cpp

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

SyntheticMergedReflections.h

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

TCPImagePusherTest.cpp

v1.0.0-rc.157 (#67)

2026-07-11 07:19:11 +02:00

TestData.h

v1.0.0-rc.153 (#63)

2026-06-23 20:29:49 +02:00

ThreadSafeFIFOSetTest.cpp

v1.0.0-rc.135 (#44)

2026-04-16 11:59:59 +02:00

TIFFTest.cpp

v1.0.0-rc.153 (#63)

2026-06-23 20:29:49 +02:00

TimeTest.cpp

v1.0.0-rc.96 (#1)

2025-11-02 13:45:57 +01:00

TopPixelsTest.cpp

v1.0.0-rc.121 (#28)

2025-12-12 21:24:20 +01:00

TranslationalNCSTest.cpp

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

TwinningAnalysisTest.cpp

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

UnitCellTest.cpp

v1.0.0-rc.146 (#56)

2026-05-28 18:48:35 +02:00

WilsonOutliersTest.cpp

Merge: a clipped observation is no witness in the Wilson test

2026-09-24 07:26:42 +02:00

WriteReflectionsTest.cpp

v1.0.0-rc.167 (#77)

2026-09-09 07:25:13 +02:00

XDSPluginTest.cpp

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00

XtalOptimizerTest.cpp

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

ZMQImagePusherTest.cpp

v1.0.0-rc.169 (#79)

2026-09-15 17:09:31 +02:00

ZMQMetadataSocketTest.cpp

v1.0.0-rc.133

2026-03-26 20:50:33 +01:00

ZMQPreviewSocketTest.cpp

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

ZSTDCompressorTest.cpp

v1.0.0.rc-161 (#71)

2026-08-13 17:03:10 +02:00