Files
Jungfraujoch/tools
leonarski_fandClaude Opus 5.5 c346597a48 battery: reference_mismatch is an annotation, not a skip
Owner decision: an outlier that has an explanation stays in the battery, because it tells
something; removing it makes the results opaque. So 3mc4 and 3r6o run the REFMAC and
depositor-data checks like every other set again, and their numbers count in the plots and
statistics. The manifest's reference_mismatch note (the frames are a ~30% twinned crystal,
the deposition another, untwinned one) is printed in the per-set table's note column and
under the REFMAC R_free ratio plot. battery.py is back to its state before 52025483d.

Checked: battery recheck of 20261017-1139_e25876_twin-isa-mismatch - REFMAC ran on both
(R_free ratio 1.362 / 1.363, dep_cc_delta_all -0.163 / -0.319) and the report shows the note
beside both rows; test_score.py OK.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01PXc1zD1yxHqaR1DGdCTHL4
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