T

leonarski_fandClaude Opus 5.5 b99cd3b5c6 rugnux doubled cell: model validation back in the doubled pass; docs for the final rules

The doubled pass now runs only on resolved, rising classes (two sets of ~134 with probe logs), so the
twenty-minute model placement in a doubled cubic cell can no longer arise, and the adopted answer is
validated again (9min: R-free 0.275 against the deposited model, 0.574 in the half cell).

Final rules, measured on gate + ci tier + all sets with a de-modulated axial row + 49 sets with a
baseline supercell occupancy >= 8% + the private arm: 9min fail -> pass (P212121, doubled cell);
every other set run keeps its verdict and a bit-identical p.hkl.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01EizBKhTqrAYago9KJG3dA3

2026-10-10 15:16:58 +02:00

.gitea/workflows

ci: the battery workflow is listed as "Validation Battery", next to "Build Packages"

2026-10-09 15:39:54 +02:00

acquisition_device

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

broker

Broker: log why a DECTRIS run ends in a detector error, reuse one SIMPLON connection

2026-10-08 22:45:42 +02:00

common

Merge branch 'sg-arms' into rc175: every merge starts from G = 1; the all-observation arm merged and searched beside the first

2026-10-10 00:42:14 +02:00

compression

v1.0.0-rc.173 (#83 )

2026-09-29 15:57:32 +02:00

detector_control

DectrisSimplonClient: separate connections for commands and status reads

2026-10-08 22:53:01 +02:00

docker

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

docs

rugnux doubled cell: model validation back in the doubled pass; docs for the final rules

2026-10-10 15:16:58 +02:00

etc

v1.0.0-rc.166 (#76 )

2026-09-02 21:17:31 +02:00

fpga

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

frame_serialize

v1.0.0-rc.173 (#83 )

2026-09-29 15:57:32 +02:00

frontend

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

gemmi_gph

v1.0.0-rc.166 (#76 )

2026-09-02 21:17:31 +02:00

image_analysis

WIP: rugnux doubled cell decided late on one pseudo-translation; screw trim reads the measured intensity

2026-10-10 13:05:11 +02:00

image_puller

v1.0.0-rc.169 (#79 )

2026-09-15 17:09:31 +02:00

image_pusher

Broker: a collection can be followed from /start, its start message comes in the event stream

2026-10-08 17:03:09 +02:00

include

v1.0.0-rc.133

2026-03-26 20:50:33 +01:00

jungfrau

v1.0.0-rc.153 (#63 )

2026-06-23 20:29:49 +02:00

licenses

viewer: cpp-httplib + Mbed TLS instead of libcurl for the broker client

2026-10-07 21:16:04 +02:00

preview

Thread count from the CPUs the process may use, not the machine's

2026-10-08 11:15:29 +02:00

reader

SMV reader: convert frames straight out of the page cache (mmap)

2026-10-10 00:00:44 +02:00

receiver

Broker: tell a reader which data files of the current collection are closed

2026-10-08 15:52:21 +02:00

rugnux

rugnux doubled cell: model validation back in the doubled pass; docs for the final rules

2026-10-10 15:16:58 +02:00

tests

WIP: doubled-cell shells count only where the geometry resolves most of the class

2026-10-10 15:08:03 +02:00

tools

battery: add five large-cell sets to the open arm

2026-10-09 20:31:28 +02:00

viewer

Merge branch 'par-merge' into rc175

2026-10-08 15:58:29 +02:00

writer

HDF5 reader: read variable-length string attributes and datasets

2026-10-09 21:15:01 +02:00

xds-plugin

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

.gitattributes

v1.0.0-rc.153 (#63 )

2026-06-23 20:29:49 +02:00

.gitignore

v1.0.0-rc.172 (#82 )

2026-09-22 06:48:37 +02:00

.readthedocs.yaml

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

CLAUDE.md

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

CMakeLists.txt

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

CONTRIBUTING.md

version 1.0.0-rc.27

2024-12-02 21:17:14 +01:00

gen_python_client.sh

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

gitea_create_release.py

v1.0.0-rc.94

2025-10-25 22:05:47 +02:00

gitea_upload_file.py

v1.0.0-rc.156 (#66 )

2026-07-03 19:18:56 +02:00

LICENSE

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

make_doc.sh

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

README.md

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

rugnux_anomalous.py

v1.0.0.rc-162 (#72 )

2026-08-25 08:21:39 +02:00

rugnux_stills_ab.py

v1.0.0-rc.172 (#82 )

2026-09-22 06:48:37 +02:00

stills_datasets.tsv

v1.0.0-rc.164 (#74 )

2026-08-26 22:47:00 +02:00

THIRD_PARTY_NOTICES.md

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

update_version.sh

XDS plugin: GPL linking permission, own tgz with its notices, macOS build; one portable CI build

2026-10-07 20:29:19 +02:00

VERSION

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

README.md

Jungfraujoch

Application to receive and analyse data from the PSI JUNGFRAU and EIGER detectors, together with rugnux, its program for processing stored diffraction data - rotation and serial, macromolecular and small-molecule - from images to merged reflections.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.