leonarski_fandClaude Opus 5.5
b7e4ea23a3
A pixel stuck at the saturation limit was never masked: the defective-pixel scan counted only the error value as "invalid on most frames", and a saturated pixel merely as lit, which the hot rule does not judge on stills. A Rayonix stills set has 3,627 pixels at 65535 on every frame, at high resolution; each flagged every reflection whose disk it fell in as overloaded, and the spot finder found them on every frame. The saturation limit now counts with the error value (CPU and CUDA), so such a pixel is masked like one holding the error value. On that set the indexed fraction rises from 10% to 33% (and 7% to 30% on the second lattice of the same run), R_split 0.120 -> 0.106 and the unrefined R-free against the deposition -0.001 / -0.024. Rotation merges checked bit-identical (three in-house sets with overloads). Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_015CeEGgpKdfkCTJb3YNMJcu
Jungfraujoch
Application to receive and analyse data from the PSI JUNGFRAU and EIGER detectors, together with
rugnux, its program for processing stored diffraction data - rotation and serial, macromolecular
and small-molecule - from images to merged reflections.
All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.