mx/Jungfraujoch

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leonarski_fandClaude Opus 4.8 b350c46777 docs: reference-based space-group/ambiguity resolution and model alignment

Document, in CPU_DATA_ANALYSIS.md, how a reference MTZ fixes the space group
and cell and resolves the indexing (merohedral) ambiguity by CCref (new
§10.9), and how model validation reindexes the data into the model's
enantiomorph and probes merohedral reindexings by R-free (new §14.5); add the
matching rc.159 changelog entries.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

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.gitea/workflows

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v1.0.0-rc.158 (#68 )

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docs: reference-based space-group/ambiguity resolution and model alignment

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v1.0.0-rc.115 (#22 )

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gemmi_gph: vendor the model / structure-factor headers into the single gemmi target

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scale_merge: add a reindexing-ambiguity resolver

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v1.0.0-rc.158 (#68 )

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v1.0.0-rc.158 (#68 )

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v1.0.0-rc.157 (#67 )

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rugnux: probe indexing ambiguities against the model in validation

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scale_merge: add a reindexing-ambiguity resolver

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v1.0.0-rc.158 (#68 )

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.gitattributes

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.gitignore

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.readthedocs.yaml

version 1.0.0-rc.25

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CLAUDE.md

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CMakeLists.txt

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CONTRIBUTING.md

version 1.0.0-rc.27

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gen_python_client.sh

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gitea_create_release.py

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gitea_upload_file.py

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LICENSE

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make_doc.sh

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README.md

version 1.0.0-rc.27

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rugnux_vs_xds.py

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THIRD_PARTY_NOTICES.md

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update_version.sh

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VERSION

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README.md

Jungfraujoch

Application to receive data from the PSI JUNGFRAU and EIGER detectors.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.