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* Rugnux: Processes a collection live while jfjoch_broker writes it (`rugnux <master.h5> <broker URL>`). * Rugnux: Processing starts on the first images and confirms its choices once all are in, so analysis can begin during collection. * Rugnux: Faster processing, especially on servers with several GPUs and CPU sockets and on computers without a GPU (`--no-gpu`, macOS). * Rugnux: Uses much less GPU memory, so large data sets stay on the GPU of smaller cards, and a data set too large for the card is processed on the CPU instead. * Rugnux: On macOS, Bragg integration runs on the Apple GPU. * Rugnux: Better handling of twinning and pseudo-symmetry, with the twin hypothesis written as `<prefix>_twin_<SG>.mtz`, and a wrong `--model` no longer confirms the data or decides the hand. * Rugnux: `--model` accepts predicted (AlphaFold) models and falls back to molecular replacement when the model is not placed as a rigid body (experimental `--mr` forces it), settling space group, hand and twinning and writing a different answer as `<prefix>_mr.mtz`. * Rugnux: Molecular replacement is faster and settles the space group in more cases with several copies in the asymmetric unit. * Rugnux: Deposition-ready mmCIF, a richer report, and numbered steps on the terminal with the full log in `<prefix>_log.txt`; `_P1.mtz`, `--estimate-beam-center` and `--beam-center-search` are removed. * Rugnux: The beam-stop shadow is found correctly on tilted detectors. * Rugnux: Stills files that record a stationary goniometer axis get the default stills geometry refinement. * jfjoch_viewer: "Analyze dataset" uses the same defaults as a bare `rugnux <file>`, and shows the results of processed CBF, marCCD and SMV sweeps. * jfjoch_viewer: The Files panel refreshes on F5 and every few seconds, and the plot type and other selections stay put during live collection. * jfjoch_writer: Memory stays bounded and old data files are closed efficiently on long runs, any failure ends the run in an error state the broker is told about, and the master file appears only after its data files; the ZeroMQ pusher logs when a stalled writer makes it drop images. * Fixes: The TCP image pusher no longer blocks the broker's receiver, GPU out-of-memory failures stop with a clear message, and the XDS plugin masks module and chip edges. --------- Co-authored-by: Filip Leonarski <jungfrau@filips-mac-mini.home> Reviewed-on: #85 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
614 lines
25 KiB
C++
614 lines
25 KiB
C++
// SPDX-FileCopyrightText: 2025 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
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// SPDX-License-Identifier: GPL-3.0-only
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#include "JFJochHttpReader.h"
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#include <cstring>
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#include <mutex>
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#include <nlohmann/json.hpp>
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#include "../frame_serialize/CBORStream2Deserializer.h"
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#include "../broker/gen/model/Image_buffer_status.h"
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#include "../broker/gen/model/Plots.h"
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#include "../broker/gen/model/Broker_status.h"
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#include "../broker/gen/model/Roi_definitions.h"
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#include "../common/InstrumentMetadata.h"
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#include "../common/JFJochMath.h"
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#include "../image_analysis/bragg_integration/CalcISigma.h"
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// Included last, after all std/project headers: on Windows <httplib.h> pulls in <windows.h>,
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// whose min/max (and other) macros must not precede the headers that use std::min / std::max.
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#include <httplib.h>
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JFJochHttpReader::HttpResult JFJochHttpReader::Request(const std::string &method, const std::string &path,
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const std::string &body,
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const std::string &content_type) const {
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// One client is reused across requests so the connection stays alive; if the socket has since
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// been closed, httplib reconnects on its own.
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std::lock_guard cl(client_mutex);
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if (!client) {
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// addr is scheme://host[:port][/prefix]; the client takes everything before the prefix.
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const auto host_start = addr.find("://");
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const auto prefix_start = addr.find('/', host_start == std::string::npos ? 0 : host_start + 3);
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path_prefix = (prefix_start == std::string::npos) ? "" : addr.substr(prefix_start);
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auto new_client = std::make_unique<httplib::Client>(addr.substr(0, prefix_start));
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if (!new_client->is_valid())
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throw JFJochException(JFJochExceptionCategory::InputParameterInvalid, "Invalid broker address " + addr);
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client = std::move(new_client);
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client->set_keep_alive(true);
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// Cap connect and the whole request at 5 s so a stalled/black-holed broker fails the request
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// instead of blocking forever (which would wedge the reader thread and Close() on
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// client_mutex). All viewer requests are small and against a nearby broker, so 5 s is ample.
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client->set_connection_timeout(5);
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client->set_max_timeout(std::chrono::seconds(5));
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}
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httplib::Headers headers;
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if (!bearer_token.empty())
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headers.emplace("Authorization", "Bearer " + bearer_token);
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const std::string url = path_prefix + path;
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auto res = (method == "PUT")
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? client->Put(url, headers, body, content_type)
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: client->Get(url, headers);
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HttpResult result;
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if (res) {
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result.ok = true;
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result.status = res->status;
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result.body = std::move(res->body);
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}
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// A protected dataset is reported the same way from every endpoint, so no caller has to know
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// which ones the broker guards.
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if (result.ok && (result.status == 401 || result.status == 403))
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throw HttpUnauthorized("Broker requires a token for the current dataset");
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return result;
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}
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void JFJochHttpReader::Token(const std::string &token) {
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std::unique_lock ul(http_mutex);
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bearer_token = token;
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}
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JFJochHttpReader::JFJochHttpReader() = default;
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JFJochHttpReader::~JFJochHttpReader() {
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ResetConnection();
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}
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void JFJochHttpReader::ResetConnection() const {
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std::lock_guard cl(client_mutex);
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client.reset();
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}
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void JFJochHttpReader::Close() {
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std::unique_lock ul(http_mutex);
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addr = "";
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SetStartMessage({});
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last_image_buffer_counter = {};
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last_op_http_sync = false;
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cached_pixel_mask.reset();
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cached_pixel_mask_arm_date.clear();
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ResetConnection(); // drop the kept-alive connection on disconnect
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}
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ImageBufferStatus JFJochHttpReader::GetImageBufferStatus() const {
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auto res = Request("GET", "/image_buffer/status");
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if (!res.ok || res.status != 200)
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throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
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"Could not get image buffer status");
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try {
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org::openapitools::server::model::Image_buffer_status status = nlohmann::json::parse(res.body);
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ImageBufferStatus ret{};
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ret.max_image_number = status.getMaxImageNumber();
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ret.min_image_number = status.getMinImageNumber();
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ret.available_slots = status.getAvailableSlots();
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ret.total_slots = status.getTotalSlots();
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ret.images_in_the_buffer = status.getImageNumbers();
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if (status.currentCounterIsSet())
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ret.current_counter = status.getCurrentCounter();
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return ret;
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} catch (std::exception &e) {
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throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
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"Could not parse image buffer status");
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}
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}
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BrokerStatus JFJochHttpReader::GetBrokerStatus() const {
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auto res = Request("GET", "/status");
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if (!res.ok || res.status != 200)
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throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
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"Could not get broker status");
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try {
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org::openapitools::server::model::Broker_status input = nlohmann::json::parse(res.body);
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BrokerStatus ret{};
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ret.broker_version = input.getBrokerVersion();
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ret.gpu_count = input.getGpuCount();
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if (input.progressIsSet())
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ret.progress = input.getProgress();
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if (input.messageIsSet())
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ret.message = input.getMessage();
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if (input.getState() == "Inactive")
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ret.state = JFJochState::Inactive;
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else if (input.getState() == "Idle")
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ret.state = JFJochState::Idle;
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else if (input.getState() == "Measuring")
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ret.state = JFJochState::Measuring;
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else if (input.getState() == "Error")
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ret.state = JFJochState::Error;
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else if (input.getState() == "Busy")
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ret.state = JFJochState::Busy;
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else if (input.getState() == "Pedestal")
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ret.state = JFJochState::Calibration;
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if (input.getMessageSeverity() == "info")
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ret.message_severity = BrokerStatus::MessageSeverity::Info;
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else if (input.getMessageSeverity() == "success")
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ret.message_severity = BrokerStatus::MessageSeverity::Success;
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else if (input.getMessageSeverity() == "warning")
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ret.message_severity = BrokerStatus::MessageSeverity::Warning;
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else if (input.getMessageSeverity() == "error")
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ret.message_severity = BrokerStatus::MessageSeverity::Error;
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if (input.brokerVersionIsSet())
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ret.broker_version = input.getBrokerVersion();
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return ret;
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} catch (std::exception &e) {
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throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
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"Could not parse broker status");
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}
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}
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uint64_t JFJochHttpReader::GetNumberOfImages() const {
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std::unique_lock ul(http_mutex);
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if (addr.empty())
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return 0;
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auto status = GetImageBufferStatus();
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return status.max_image_number + 1;
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}
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std::shared_ptr<JFJochReaderDataset> JFJochHttpReader::UpdateDataset_i() {
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auto res = Request("GET", "/image_buffer/start.cbor");
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if (!res.ok || (res.status != 200 && res.status != 404))
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throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
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"Could not get image buffer status");
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if (res.status == 404)
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return {};
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if (res.body.empty())
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return {};
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try {
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auto msg = CBORStream2Deserialize(res.body);
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if (msg->msg_type != CBORImageType::START)
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return {};
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auto dataset = std::make_shared<JFJochReaderDataset>();
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dataset->arm_date = msg->start_message->arm_date;
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dataset->experiment = default_experiment;
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// JFJochReader is always using int32_t
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dataset->experiment.BitDepthImage(32);
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dataset->experiment.PixelSigned(true);
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dataset->experiment.FilePrefix(msg->start_message->file_prefix);
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dataset->experiment.BeamX_pxl(msg->start_message->beam_center_x);
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dataset->experiment.BeamY_pxl(msg->start_message->beam_center_y);
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dataset->experiment.DetectorDistance_mm(msg->start_message->detector_distance * 1000.0);
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dataset->experiment.DetectIceRings(msg->start_message->detect_ice_rings.value_or(false));
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dataset->experiment.PoniRot1_rad(msg->start_message->poni_rot1.value_or(0.0));
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dataset->experiment.PoniRot2_rad(msg->start_message->poni_rot2.value_or(0.0));
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dataset->experiment.PoniRot3_rad(msg->start_message->poni_rot3.value_or(0.0));
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dataset->az_int_bin_to_q = msg->start_message->az_int_bin_to_q;
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dataset->az_int_bin_to_phi = msg->start_message->az_int_bin_to_phi;
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dataset->q_bins = msg->start_message->az_int_q_bin_count.value_or(0);
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dataset->azimuthal_bins = msg->start_message->az_int_phi_bin_count.value_or(0);
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dataset->jfjoch_release = msg->start_message->jfjoch_release;
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DetectorSetup detector = DetDECTRIS(msg->start_message->image_size_x, msg->start_message->image_size_y,
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msg->start_message->detector_description, {});
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detector.PixelSize_um(msg->start_message->pixel_size_x * 1e6);
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detector.ImageOrientation(DetectorOrientation(msg->start_message->detector_orientation_mirror_y,
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msg->start_message->detector_orientation_quarter_turns));
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detector.SaturationLimit(SaturationLimitFromValue(msg->start_message->saturation_value));
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detector.MinFrameTime(std::chrono::microseconds(0));
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detector.MinCountTime(std::chrono::microseconds(0));
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detector.ReadOutTime(std::chrono::microseconds (0));
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dataset->experiment.Detector(detector);
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dataset->experiment.FrameTime(
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std::chrono::microseconds(std::lround(msg->start_message->frame_time * 1e6)),
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std::chrono::microseconds(std::lround(msg->start_message->count_time * 1e6))
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);
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if (!msg->start_message->pixel_mask.empty()) {
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// The pixel mask is constant for an acquisition; build the full-detector (~tens of MB)
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// PixelMask once per arm and share it across the per-refresh dataset snapshots, so a live
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// dataset refresh does not reconstruct and copy it on every tick.
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if (!cached_pixel_mask || cached_pixel_mask_arm_date != dataset->arm_date) {
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cached_pixel_mask =
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std::make_shared<const PixelMask>(msg->start_message->pixel_mask.begin()->second);
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cached_pixel_mask_arm_date = dataset->arm_date;
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}
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dataset->pixel_mask = cached_pixel_mask;
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}
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dataset->experiment.NumTriggers(1);
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dataset->experiment.ImagesPerTrigger(msg->start_message->number_of_images);
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InstrumentMetadata instrument;
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instrument.SourceName(msg->start_message->source_name);
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instrument.SourceType(msg->start_message->source_type);
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instrument.InstrumentName(msg->start_message->instrument_name);
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dataset->experiment.ImportInstrumentMetadata(instrument);
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dataset->experiment.SampleName(msg->start_message->sample_name);
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dataset->experiment.SampleTemperature_K(msg->start_message->sample_temperature_K);
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dataset->experiment.RingCurrent_mA(msg->start_message->ring_current_mA);
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dataset->experiment.TotalFlux(msg->start_message->total_flux);
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dataset->experiment.AttenuatorTransmission(msg->start_message->attenuator_transmission);
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dataset->experiment.IncidentEnergy_keV(msg->start_message->incident_energy / 1000.0);
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dataset->experiment.FluorescenceSpectrum(msg->start_message->fluorescence_spectrum);
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dataset->bkg_estimate = GetPlot_i("bkg_estimate");
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dataset->spindle_blind_fraction = GetPlot_i("spindle_blind_fraction");
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dataset->ice_ring_score = GetPlot_i("ice_ring_score");
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dataset->spot_count = GetPlot_i("spot_count");
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dataset->spot_count_ice_rings = GetPlot_i("spot_count_ice");
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dataset->spot_count_low_res = GetPlot_i("spot_count_low_res");
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dataset->spot_count_indexed = GetPlot_i("spot_count_indexed");
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dataset->indexing_result = GetPlot_i("indexing_rate");
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dataset->indexing_lattice_count = GetPlot_i("indexing_lattice_count");
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dataset->profile_radius = GetPlot_i("profile_radius");
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dataset->mosaicity_deg = GetPlot_i("mosaicity");
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dataset->b_factor = GetPlot_i("b_factor");
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dataset->resolution_estimate = GetPlot_i("resolution_estimate");
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dataset->efficiency = GetPlot_i("image_collection_efficiency");
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dataset->integrated_reflections = GetPlot_i("integrated_reflections");
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dataset->image_scale_factor = GetPlot_i("image_scale_factor");
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dataset->image_scale_cc = GetPlot_i("image_scale_cc");
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// Not alternatives: a grid scan is collected at a head position the axis still reports, so
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// the START message carries both. Taking the axis and dropping the grid left the raster
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// drawn as a line plot (OpenAPIConvert.cpp had the same bug on the broker side).
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dataset->experiment.Goniometer(msg->start_message->goniometer);
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dataset->experiment.GridScan(msg->start_message->grid_scan);
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dataset->experiment.Smargon(msg->start_message->smargon_position);
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return dataset;
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} catch (std::exception &e) {
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throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
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std::string("Could not load dataset: ") + std::string(e.what()));
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}
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}
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void JFJochHttpReader::ReadURL(const std::string &url) {
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std::unique_lock ul(http_mutex);
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ResetConnection(); // selecting an address (re)opens the connection from scratch
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// Drop the previous source's cached mask: a different (or re-armed) source has its own mask, and
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// the arm_date key alone does not distinguish an empty/duplicate arm_date across sources.
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cached_pixel_mask.reset();
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cached_pixel_mask_arm_date.clear();
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addr = url;
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if (url.empty())
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SetStartMessage({});
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else
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SetStartMessage(UpdateDataset_i());
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}
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std::shared_ptr<const JFJochReaderDataset> JFJochHttpReader::RefreshDatasetIfChanged(int64_t &num_images_out) {
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std::unique_lock ul(http_mutex);
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num_images_out = 0;
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if (addr.empty())
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return {};
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auto status = GetImageBufferStatus();
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num_images_out = status.max_image_number + 1;
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// Re-fetch the dataset (start message + plots) only when the buffer actually changed,
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// so the dataset-only follow mode does not hammer the broker with plot requests.
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const bool buffer_changed = !last_image_buffer_counter.has_value()
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|| !status.current_counter.has_value()
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|| last_image_buffer_counter.value() != status.current_counter.value();
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last_image_buffer_counter = status.current_counter;
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if (!buffer_changed)
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return {};
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SetStartMessage(UpdateDataset_i());
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return GetDataset();
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}
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bool JFJochHttpReader::LoadImage_i(std::shared_ptr<JFJochReaderDataset> &dataset,
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DataMessage &message,
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std::vector<uint8_t> &buffer,
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int64_t image_number,
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bool update_dataset) {
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std::unique_lock ul(http_mutex);
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if (addr.empty())
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return false;
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bool buffer_changed = false;
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// For autoupdate - if buffer didn't change don't update dataset
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auto status = GetImageBufferStatus();
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if (!last_image_buffer_counter.has_value() // No information on the previous buffer state - always assume it changed
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|| !status.current_counter.has_value() // No information on the current buffer state - e.g. old version of software
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|| last_image_buffer_counter.value() != status.current_counter.value()) // current counter value different from previous
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buffer_changed = true;
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last_image_buffer_counter = status.current_counter;
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if (image_number == -1) {
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if (last_op_http_sync && !buffer_changed)
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return false;
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last_op_http_sync = true;
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} else {
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last_op_http_sync = false;
|
|
}
|
|
|
|
// Always update dataset, as it might have changed from the last time
|
|
if (buffer_changed && update_dataset)
|
|
dataset = UpdateDataset_i();
|
|
if (!dataset)
|
|
return false;
|
|
|
|
auto res = Request("GET", "/image_buffer/image.cbor?id=" + std::to_string(image_number));
|
|
|
|
if (!res.ok || res.status != 200)
|
|
return false;
|
|
|
|
if (res.body.empty()) {
|
|
return false;
|
|
}
|
|
|
|
try {
|
|
buffer.resize(res.body.size());
|
|
memcpy(buffer.data(), res.body.data(), res.body.size());
|
|
|
|
auto msg = CBORStream2Deserialize(buffer);
|
|
|
|
if (msg->msg_type != CBORImageType::IMAGE)
|
|
return false;
|
|
|
|
message = *msg->data_message;
|
|
|
|
CalcISigma(message);
|
|
CalcWilsonBFactor(message);
|
|
|
|
return true;
|
|
} catch (std::exception &e) {
|
|
return false;
|
|
}
|
|
}
|
|
|
|
bool JFJochHttpReader::ReadRawImage(int64_t image_number, JFJochReaderRawImage &image) {
|
|
if (addr.empty())
|
|
return false;
|
|
|
|
HttpResult res;
|
|
try {
|
|
res = Request("GET", "/image_buffer/image.cbor?id=" + std::to_string(image_number));
|
|
} catch (const HttpUnauthorized &) {
|
|
return false;
|
|
}
|
|
|
|
if (!res.ok || res.status != 200 || res.body.empty())
|
|
return false;
|
|
|
|
try {
|
|
auto msg =
|
|
CBORStream2Deserialize(reinterpret_cast<uint8_t *>(res.body.data()), res.body.size());
|
|
|
|
if (msg->msg_type != CBORImageType::IMAGE)
|
|
return false;
|
|
|
|
image.image_buffer.resize(msg->data_message->image.GetCompressedSize());
|
|
memcpy(image.image_buffer.data(),
|
|
msg->data_message->image.GetCompressed(),
|
|
msg->data_message->image.GetCompressedSize());
|
|
image.image = CompressedImage(
|
|
image.image_buffer.data(),
|
|
image.image_buffer.size(),
|
|
msg->data_message->image.GetWidth(),
|
|
msg->data_message->image.GetHeight(),
|
|
msg->data_message->image.GetMode(),
|
|
msg->data_message->image.GetCompressionAlgorithm()
|
|
);
|
|
|
|
return true;
|
|
} catch (std::exception &e) {
|
|
return false;
|
|
}
|
|
}
|
|
|
|
std::vector<float> JFJochHttpReader::GetPlot_i(const std::string &plot_type, float fill_value) const {
|
|
if (addr.empty())
|
|
return {};
|
|
|
|
auto res_bin = Request("GET", "/preview/plot.bin?type=" + plot_type);
|
|
if (res_bin.ok && res_bin.status == 200) {
|
|
if (res_bin.body.size() % sizeof(float) != 0) {
|
|
throw std::runtime_error("Input size is not a multiple of sizeof(float)");
|
|
}
|
|
std::vector<float> v(res_bin.body.size() / sizeof(float));
|
|
std::memcpy(v.data(), res_bin.body.data(), res_bin.body.size());
|
|
return v;
|
|
}
|
|
|
|
auto res = Request("GET", "/preview/plot?binning=1&experimental_coord=false&fill="
|
|
+ std::to_string(fill_value) + "&type=" + plot_type);
|
|
|
|
if (!res.ok || res.status != 200)
|
|
return {};
|
|
|
|
try {
|
|
org::openapitools::server::model::Plots plots = nlohmann::json::parse(res.body);
|
|
auto plot_v = plots.getPlot();
|
|
if (plot_v.size() == 1)
|
|
return plot_v[0].getY();
|
|
else
|
|
return {};
|
|
} catch (nlohmann::json::parse_error &e) {
|
|
throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
|
|
"Could not parse plot " + plot_type);
|
|
}
|
|
}
|
|
|
|
void JFJochHttpReader::UploadUserMask(const std::vector<uint32_t>& mask) {
|
|
std::unique_lock ul(http_mutex);
|
|
|
|
if (addr.empty())
|
|
throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
|
|
"HTTP address not set. Call ReadURL() first.");
|
|
|
|
if (mask.empty())
|
|
throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
|
|
"User mask is empty.");
|
|
|
|
const char* data_ptr = reinterpret_cast<const char*>(mask.data());
|
|
const size_t byte_size = mask.size() * sizeof(uint32_t);
|
|
|
|
auto res = Request("PUT", "/config/user_mask",
|
|
std::string(data_ptr, byte_size),
|
|
"application/octet-stream");
|
|
|
|
if (!res.ok)
|
|
throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
|
|
"Failed to connect to server to upload user mask");
|
|
|
|
if (res.status != 200)
|
|
throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
|
|
"Server rejected user mask upload");
|
|
}
|
|
|
|
ROIDefinition JFJochHttpReader::GetROIDefinitions() const {
|
|
std::unique_lock ul(http_mutex);
|
|
if (addr.empty())
|
|
throw JFJochException(JFJochExceptionCategory::InputParameterInvalid, "HTTP address not set");
|
|
|
|
auto res = Request("GET", "/config/roi");
|
|
if (!res.ok || res.status != 200)
|
|
throw JFJochException(JFJochExceptionCategory::InputParameterInvalid, "Could not get ROI definitions");
|
|
|
|
org::openapitools::server::model::Roi_definitions input = nlohmann::json::parse(res.body);
|
|
ROIDefinition out;
|
|
for (const auto &i : input.getBox().getRois())
|
|
out.boxes.emplace_back(i.getName(), i.getMinXPxl(), i.getMaxXPxl(), i.getMinYPxl(), i.getMaxYPxl());
|
|
for (const auto &i : input.getCircle().getRois())
|
|
out.circles.emplace_back(i.getName(), i.getCenterXPxl(), i.getCenterYPxl(), i.getRadiusPxl());
|
|
for (const auto &i : input.getAzim().getRois()) {
|
|
float phi_min = 0, phi_max = 0;
|
|
if (i.phiMinDegIsSet() && i.phiMaxDegIsSet()) {
|
|
phi_min = i.getPhiMinDeg();
|
|
phi_max = i.getPhiMaxDeg();
|
|
}
|
|
const float d_min = (i.getQMaxRecipA() == 0.0f) ? 0.0f : 2.0f * static_cast<float>(PI) / i.getQMaxRecipA();
|
|
const float d_max = (i.getQMinRecipA() == 0.0f) ? 0.0f : 2.0f * static_cast<float>(PI) / i.getQMinRecipA();
|
|
out.azimuthal.emplace_back(i.getName(), d_min, d_max, phi_min, phi_max);
|
|
}
|
|
return out;
|
|
}
|
|
|
|
void JFJochHttpReader::UploadROIDefinitions(const ROIDefinition &rois) const {
|
|
std::unique_lock ul(http_mutex);
|
|
if (addr.empty())
|
|
throw JFJochException(JFJochExceptionCategory::InputParameterInvalid, "HTTP address not set");
|
|
|
|
namespace model = org::openapitools::server::model;
|
|
model::Roi_definitions out;
|
|
|
|
model::Roi_box_list bl;
|
|
std::vector<model::Roi_box> boxes;
|
|
for (const auto &b : rois.boxes) {
|
|
model::Roi_box e;
|
|
e.setName(b.GetName());
|
|
e.setMinXPxl(b.GetXMin()); e.setMaxXPxl(b.GetXMax());
|
|
e.setMinYPxl(b.GetYMin()); e.setMaxYPxl(b.GetYMax());
|
|
boxes.push_back(e);
|
|
}
|
|
bl.setRois(boxes);
|
|
out.setBox(bl);
|
|
|
|
model::Roi_circle_list cl;
|
|
std::vector<model::Roi_circle> circles;
|
|
for (const auto &c : rois.circles) {
|
|
model::Roi_circle e;
|
|
e.setName(c.GetName());
|
|
e.setCenterXPxl(c.GetX()); e.setCenterYPxl(c.GetY());
|
|
e.setRadiusPxl(c.GetRadius_pxl());
|
|
circles.push_back(e);
|
|
}
|
|
cl.setRois(circles);
|
|
out.setCircle(cl);
|
|
|
|
model::Roi_azim_list al;
|
|
std::vector<model::Roi_azimuthal> azim;
|
|
for (const auto &a : rois.azimuthal) {
|
|
model::Roi_azimuthal e;
|
|
e.setName(a.GetName());
|
|
e.setQMinRecipA(a.GetQMin_recipA());
|
|
e.setQMaxRecipA(a.GetQMax_recipA());
|
|
if (a.HasPhi()) {
|
|
e.setPhiMinDeg(a.GetPhiMin_deg());
|
|
e.setPhiMaxDeg(a.GetPhiMax_deg());
|
|
}
|
|
azim.push_back(e);
|
|
}
|
|
al.setRois(azim);
|
|
out.setAzim(al);
|
|
|
|
nlohmann::json j = out;
|
|
auto res = Request("PUT", "/config/roi", j.dump(), "application/json");
|
|
if (!res.ok)
|
|
throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
|
|
"Failed to connect to server to upload ROIs");
|
|
if (res.status != 200)
|
|
throw JFJochException(JFJochExceptionCategory::InputParameterInvalid, "Server rejected ROI upload");
|
|
}
|
|
|
|
std::vector<SpotToSave> JFJochHttpReader::ReadSpots(int64_t image) const {
|
|
std::unique_lock ul(http_mutex);
|
|
|
|
if (image < 0)
|
|
throw JFJochException(JFJochExceptionCategory::InputParameterInvalid,
|
|
"Image number must be non-negative");
|
|
|
|
if (addr.empty())
|
|
return {};
|
|
|
|
HttpResult res;
|
|
try {
|
|
res = Request("GET", "/image_buffer/image.cbor?id=" + std::to_string(image));
|
|
} catch (const HttpUnauthorized &) {
|
|
return {};
|
|
}
|
|
|
|
if (!res.ok || res.status != 200 || res.body.empty())
|
|
return {};
|
|
|
|
try {
|
|
auto msg = CBORStream2Deserialize(res.body);
|
|
|
|
if (msg->msg_type != CBORImageType::IMAGE)
|
|
return {};
|
|
|
|
return msg->data_message->spots;
|
|
} catch (std::exception &e) {
|
|
return {};
|
|
}
|
|
}
|